PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.003G005500.4.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 432aa    MW: 47712.3 Da    PI: 10.1738
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.003G005500.4.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.11.4e-17197287199
                           EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSE CS
                    B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrse 89 
                           f k+++ps+v +  +l +p +f+++h  k  e++ ++lede+g+    ++   +++++  l++GW++F+  +++k+gD++vF+l+++++
  Sobic.003G005500.4.p 197 FTKAMLPSHVIRGFWLGMPTEFCNKHLPK--EDTGIMLEDENGEDHHTTY--LGSRQG--LSGGWRGFAIKHDIKVGDVLVFQLVESRK 279
                           89**********************99533..4457***************..899888..9**********************998666 PP

                           E..EEEEE-S CS
                    B3  90 felvvkvfrk 99 
                           f  +v ++r+
  Sobic.003G005500.4.p 280 F--KVYIIRA 287
                           6..9999886 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019365.3E-22192288IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.4E-19192288IPR015300DNA-binding pseudobarrel domain
CDDcd100178.38E-25196286No hitNo description
SMARTSM010191.5E-17197288IPR003340B3 DNA binding domain
PfamPF023621.1E-15197287IPR003340B3 DNA binding domain
PROSITE profilePS5086312.562197288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 432 aa     Download sequence    Send to blast
MEIASRVSLG IHQPHSTTGF QFQQGVPPPG FQRRVAAEAM ANDPPPPLKR KRGRPPGSKS  60
AKSRIGSPPG EQSPQSKMEQ KVALVKQRVA LLDSASNSSC SDSDKPAVLH CGDTDDEGNY  120
NLLKALKSRR LDSEQKKLSG ALQAHNAQNI ITGVTNIAEA SDINGQILSA SVHGNCGSAM  180
ARAKEVQAKL PENHLSFTKA MLPSHVIRGF WLGMPTEFCN KHLPKEDTGI MLEDENGEDH  240
HTTYLGSRQG LSGGWRGFAI KHDIKVGDVL VFQLVESRKF KVYIIRANEF TATDGAISLL  300
NLEARKKGKL LSKATRVEHS VPADDDNVVI NKAGRLRISD SDMDFGDVTS FSDFSIIVDR  360
LVIDCKFQEP LRRTYYELCR SQKAFLHRRQ SASRRASRRA RRSGRLPTRT CWCGRRPWSP  420
WLCLAWMSGS C*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.93650.0pollen
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.003G005500.4.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021311371.10.0B3 domain-containing protein Os01g0234100 isoform X2
SwissprotQ0JP999e-96Y1341_ORYSJ; B3 domain-containing protein Os01g0234100
TrEMBLA0A1B6Q0L50.0A0A1B6Q0L5_SORBI; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19184.11e-34B3 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]