PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G422300.1.p
Common NameSb02g043350, SORBIDRAFT_02g043350
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family EIL
Protein Properties Length: 595aa    MW: 63959.1 Da    PI: 6.4524
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G422300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN3433.12.6e-132714581354
                           XXXXXXXXXXXXXXXXXXXXXXX..XXXXX.XXXXXXX..XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX CS
                  EIN3   1 eelkkrmwkdqmllkrlkerkkqlledkeaatgakksn..ksneqarrkkmsraQDgiLkYMlkemevcnaqGfvYgiipekgkpvega 87 
                           eel++rmw+d+++l+rlke+++q++ d+ +a++++  +   ++eqarrkkmsraQDgiLkYMlk+mevcnaqGfvYgiipe+gkpv+ga
  Sobic.002G422300.1.p  71 EELERRMWRDRVRLRRLKEQQQQQISDRPSAVKQEA-RggSRQEQARRKKMSRAQDGILKYMLKMMEVCNAQGFVYGIIPENGKPVTGA 158
                           8************************99988754443.2459************************************************ PP

                           XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXXX....XXXXXX....XX----STTS-HHHHHHHHHHHSSSSSS-TTS--TTT--HHHH CS
                  EIN3  88 sdsLraWWkekvefdrngpaaiskyqaknlil....sgesslqtersseshslselqDTtlgSLLsalmqhcdppqrrfplekgvepPW 172
                           sd+LraWWkekv+fdrngpaa +kyqa+ ++     +g+ ++  ++ + +hsl+elqDTtlgSLLsalmqhcdppqrrfplekg +pPW
  Sobic.002G422300.1.p 159 SDNLRAWWKEKVRFDRNGPAAAAKYQADSAATaaagDGGGGMAPNALAGPHSLHELQDTTLGSLLSALMQHCDPPQRRFPLEKGRSPPW 247
                           *************************665544311103333446678899***************************************8 PP

                           ---S--HHHHHHT--TT--.-----GGG--HHHHHHHHHHHHHHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XX CS
                  EIN3 173 WPtGkelwwgelglskdqgtppykkphdlkkawkvsvLtavikhmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvs 261
                           WP+        ++++ + g+ppykkphdlkkawkv+vLtavikhmsp++++ r+l+rqsk+lqdkm+a+e  ++l+vl+qee+++ +++
  Sobic.002G422300.1.p 248 WPQ--------AAVPGELGPPPYKKPHDLKKAWKVAVLTAVIKHMSPDVDKARRLVRQSKCLQDKMTAREIVTWLAVLRQEEELYLQLH 328
                           884........457889************************************************************************ PP

                           XXXX.XXXXXXXXXXXXXXXXXXXXXXXXXX.X..XXXXXXXXX.....................................XXXXXXXX CS
                  EIN3 262 ahss.slrkqspkvtlsceqkedvegkkeskik..hvqavktta.....................................gfpvvrkr 310
                           +  +   ++ ++  ++ ++ ++dv+g + + +   h    +  a                                     ++++ +kr
  Sobic.002G422300.1.p 329 PGARpAPSSAATIPFCASSGEYDVDGADGEDTGrnHQPPSN--AaasfvdlsssaaamdddaghtkfvmpapaalmkeeaaDAEFFQKR 415
                           **553323344445566677999*95444442200333333..2468999*************************************** PP

                           XXXXXXXXXXXXX......XXXXXXX.XXXXXXXXXXXXXXXXX CS
                  EIN3 311 kkkpsesakvsskevsrtcqssqfrgsetelifadknsisqney 354
                            +  + + +  s+   +tc + ++++s+ +++f d+n+++ ++y
  Sobic.002G422300.1.p 416 SA-VEPELMLGSSFRAYTCGNVRCPHSSGAHGFLDRNARNAHQY 458
                           94.4444445556678**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF048732.5E-11571321No hitNo description
Gene3DG3DSA:1.10.3180.106.6E-59207329IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167688.11E-50209325IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 595 aa     Download sequence    Send to blast
MMAGGGGALM LDQRMAAAGD KALFGFGAGE CFFGEGDLVC PAPANEETMA MTFPLDEMMM  60
MMSDDDADGI EELERRMWRD RVRLRRLKEQ QQQQISDRPS AVKQEARGGS RQEQARRKKM  120
SRAQDGILKY MLKMMEVCNA QGFVYGIIPE NGKPVTGASD NLRAWWKEKV RFDRNGPAAA  180
AKYQADSAAT AAAGDGGGGM APNALAGPHS LHELQDTTLG SLLSALMQHC DPPQRRFPLE  240
KGRSPPWWPQ AAVPGELGPP PYKKPHDLKK AWKVAVLTAV IKHMSPDVDK ARRLVRQSKC  300
LQDKMTAREI VTWLAVLRQE EELYLQLHPG ARPAPSSAAT IPFCASSGEY DVDGADGEDT  360
GRNHQPPSNA AASFVDLSSS AAAMDDDAGH TKFVMPAPAA LMKEEAADAE FFQKRSAVEP  420
ELMLGSSFRA YTCGNVRCPH SSGAHGFLDR NARNAHQYSC KFNNSAGAAA AALSGLDFDL  480
PVDGQRSLAE LMDMYEANVG GAPRSLVSNV NTAAPGVQVP GPYPTPCLFG DAISNVIQQG  540
AAAFYVRDDA SPELRFGSGL NVAGGAAHYG GALQVQQQQP QPHKSTGSNA NWFY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4zds_A4e-592063291132Protein ETHYLENE INSENSITIVE 3
4zds_B4e-592063291132Protein ETHYLENE INSENSITIVE 3
Search in ModeBase
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in roots (PubMed:19798512). Expressed at low levels in panicles (PubMed:19798512). Expressed in roots, leaf blades, leaf sheaths, stems, anthers of young flowers, shells, and developing grains (PubMed:25995326). {ECO:0000269|PubMed:19798512, ECO:0000269|PubMed:25995326}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor acting as a positive regulator in the ethylene response pathway (PubMed:19798512, PubMed:25995326). Involved in wound signaling by binding specifically to the DNA sequence 5'-ATGTACCT-3' found in the promoter of some wound-inducible genes (PubMed:19798512). Required for ethylene-promoted coleoptile elongation (PubMed:25995326). Acts as negative regulator of salt tolerance (PubMed:25995326). During salt stress, activates the cation transporter HKT1, which mediates increased sodium uptake in roots, and contributes to sodium accumulation and salt toxicity (PubMed:25995326). Possesses transactivation activity in protoplasts (PubMed:25995326). {ECO:0000269|PubMed:19798512, ECO:0000269|PubMed:25995326}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G422300.1.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by wounding and metyhl jasmonate. {ECO:0000269|PubMed:19798512}.
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7280140.0KJ728014.1 Zea mays clone pUT6150 EIL transcription factor (EIL6) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463411.20.0ETHYLENE INSENSITIVE 3-like 1 protein
SwissprotQ8W3L90.0EIL2_ORYSJ; Protein ETHYLENE-INSENSITIVE 3-like 2
TrEMBLA0A1W0W8050.0A0A1W0W805_SORBI; Uncharacterized protein
STRINGSb02g043350.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP63838168
Representative plantOGRP5631682
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27050.11e-117ETHYLENE-INSENSITIVE3-like 1
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Yang C, et al.
    MAOHUZI6/ETHYLENE INSENSITIVE3-LIKE1 and ETHYLENE INSENSITIVE3-LIKE2 Regulate Ethylene Response of Roots and Coleoptiles and Negatively Affect Salt Tolerance in Rice.
    Plant Physiol., 2015. 169(1): p. 148-65
    [PMID:25995326]