PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G418500.1.p
Common NameSb02g043030, SORBIDRAFT_02g043030
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 355aa    MW: 37058.3 Da    PI: 9.0594
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G418500.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY78.86.1e-25125186159
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 
                           ldDg +WrKYGqK +++s++prsYYrCt++   +C+++++v+ s+ +p+ ++i Y g+H+++
  Sobic.002G418500.1.p 125 LDDGKAWRKYGQKRIHESPNPRSYYRCTHRpeqRCMATRQVQASDANPSEFIISYYGQHTCQ 186
                           58***************************99999**************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.8E-25112188IPR003657WRKY domain
SuperFamilySSF1182907.06E-24118188IPR003657WRKY domain
PROSITE profilePS5081121.792120188IPR003657WRKY domain
SMARTSM007741.3E-32125187IPR003657WRKY domain
PfamPF031065.6E-23126186IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 355 aa     Download sequence    Send to blast
MASSAGGGGR RSPPATAAPR MVMDRLMEVH EGATKLQTML QESPTPSIAA AAGTTSELRL  60
TIDRMLSSLS SAMSAWNTTG AAQGPGQGRR RRRGEAAAGS GPQRRSSTRR RSHSPFVKMV  120
TTSKLDDGKA WRKYGQKRIH ESPNPRSYYR CTHRPEQRCM ATRQVQASDA NPSEFIISYY  180
GQHTCQDPST IPLVIPDTAP PPDCANLISF GGCTTIAAGA SSSSTTTTAV PPQQALSFDP  240
TTTPMLMLSR FGYSSSLPAA QAQQDYRCGS EEVLSSRSSP AAQLATMVVG SAGTMASSST  300
VGSAPAEYWP GGTSGMACGP GSFPSSPSSL GFMTGSPFGS FGNAGDDDLF GFDP*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A3e-22120186369OsWRKY45
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G418500.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463396.10.0WRKY transcription factor 22
TrEMBLC5X5M40.0C5X5M4_SORBI; Uncharacterized protein
STRINGSb02g043030.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP125272837
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G46400.14e-25WRKY DNA-binding protein 46