PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G359300.2.p | ||||||||
Common Name | Sb02g038000, SORBIDRAFT_02g038000 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 240aa MW: 24736.5 Da PI: 8.4911 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12 | 0.00065 | 99 | 121 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ Cgk++++ L H +H Sobic.002G359300.2.p 99 YECSVCGKVYPSYQALGGHKTSH 121 99**********99998888777 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.07E-7 | 99 | 121 | No hit | No description |
SMART | SM00355 | 0.022 | 99 | 121 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 7.1E-14 | 99 | 123 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.785 | 99 | 126 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 101 | 121 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 1.07E-7 | 150 | 177 | No hit | No description |
Pfam | PF13912 | 7.7E-12 | 154 | 179 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.43 | 155 | 177 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.224 | 155 | 177 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 157 | 177 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 240 aa Download sequence Send to blast |
MALDAAIDVS SSKPPVPPPS PPRIDSWARG GRRSKRRAGS PASDGGSGGG DHDQSEQEYL 60 ALCLLMLSRG LRGDDATDVG GGAAPTVAKT TQHHHQHGYE CSVCGKVYPS YQALGGHKTS 120 HRKPPTPPTP PPGDEASSGS GGAAHAEEKE KEKVHQCSLC LRTFPSGQAL GGHKRLHYEG 180 GVGDGAKDKD KDAVTKANKA SAAAAATTAV LRDFDLNLPA DGAPPEAKRA RTTTMLLVV* |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00399 | DAP | Transfer from AT3G49930 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G359300.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460947.1 | 1e-173 | zinc finger protein 1 | ||||
TrEMBL | A0A1W0W732 | 1e-171 | A0A1W0W732_SORBI; Uncharacterized protein | ||||
STRING | Sb02g038000.1 | 1e-172 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP10028 | 23 | 35 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G49930.1 | 1e-27 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G359300.2.p |
Entrez Gene | 8058383 |