PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G359200.1.p
Common NameSb02g037990, SORBIDRAFT_02g037990
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 283aa    MW: 31340.8 Da    PI: 4.6263
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G359200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH30.56.6e-102062461055
                           HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           r+RR+riN+++  L++l+P+      +K++ +++Le+A +Y+k Lq
  Sobic.002G359200.1.p 206 RKRRERINERLRILQKLVPNG-----TKVDISTMLEEAAQYVKFLQ 246
                           9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.881196245IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474597.98E-14197262IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.5E-12201259IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003531.7E-10202251IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000836.75E-12205250No hitNo description
PfamPF000103.6E-7206246IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MEIDMMAQFL GTDDHCFTYE YEHVDESMEA IAALFLPNLD TDSNSSSCLN FDVPPQCWPQ  60
PDHSSSVTSL LDPTENFESF EFPVIDPFPA SGFDSHCETP YLTEYPISLH GKHSSVIEEE  120
AANVTPAAKK RKASATTKGS KKSRKVSKKD YIGDDDGGDA YVDTQSSSSC TSEDGNFEGN  180
TNSSTKKAYT RASRGAATDP QSLYARKRRE RINERLRILQ KLVPNGTKVD ISTMLEEAAQ  240
YVKFLQLQIK LLSSDDTWMY APIAYNGINI SNVDLNIPSL QK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G359200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463111.20.0transcription factor bHLH54
SwissprotQ7XHI93e-49BH084_ARATH; Transcription factor bHLH84
TrEMBLC5XD430.0C5XD43_SORBI; Uncharacterized protein
STRINGSb02g037990.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP124962935
Representative plantOGRP10481454
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.12e-37bHLH family protein