PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G357400.1.p
Common NameSb02g037860, SORBIDRAFT_02g037860
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family HRT-like
Protein Properties Length: 549aa    MW: 60472.6 Da    PI: 9.4876
Description HRT-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G357400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HRT-like53.73.4e-17307337131
              HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 
                           +CGv ledGs C ++Pv+gRKRC  HKG+R+
  Sobic.002G357400.1.p 307 VCGVVLEDGSSCLEHPVHGRKRCSLHKGKRV 337
                           7*****************************7 PP
2HRT-like535.6e-17509538130
              HRT-like   1 iCGviledGsvCkrqPvkgRKRCeeHKGmR 30 
                           +CG++++dGs+C++ Pv+gRKRC+ HKG+R
  Sobic.002G357400.1.p 509 TCGAHTSDGSPCMNRPVEGRKRCALHKGQR 538
                           7****************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004650.003273179IPR000305GIY-YIG nuclease superfamily
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:2000033Biological Processregulation of seed dormancy process
GO:0097100Molecular Functionsupercoiled DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 549 aa     Download sequence    Send to blast
MPAPAAPVTA RLKREDCPRT KHDSLFSPWK VLVGPSDWKD HAAGKEGVQR YRIRNLPDNF  60
PGLYELGVAG AADEGVRTRR RDARGVVVVY LGQADSVRAR LQQYGRSGSH LDTANSLGSA  120
GKDAVNALAA GPGLFREVFS RGYSVVFRCA LMDNKQEAEK TEALLLRVFD YAWNKLQNGA  180
CRREEILHKL ELQAANHRSL LSRVSDMKQK IFGEKAGIKI KGSGSANTSP GIIKSMLPRV  240
RTIVRFRPQV LNSEDNEGEM TDIPWKKISD IPYANRQAHR RRSEGYKVKK IDVTKRRTVP  300
IQDSNSVCGV VLEDGSSCLE HPVHGRKRCS LHKGKRVKGS PKSSPTSYPC QVEIATTEFV  360
PCLTEDLDNS VPKQESEILP KNMSITLKEP LRQSNSFESE KVNTGEASTE DGTCEISKDA  420
CALEEKACHA ESESKEQQPS GRMWFELLKS QTKSASTHSS RGSGSQITVM TDKRPCKMVS  480
IAEMERCEKD SGIEVTVASF SRSSGWPCTC GAHTSDGSPC MNRPVEGRKR CALHKGQRAA  540
FLPTSLVQ*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G357400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0341200.0BT034120.1 Zea mays full-length cDNA clone ZM_BFc0033H14 mRNA, complete cds.
GenBankHQ8587570.0HQ858757.1 Zea mays clone UT1499 HRT transcription factor mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463101.10.0protein EFFECTOR OF TRANSCRIPTION 2
TrEMBLC5XD270.0C5XD27_SORBI; Uncharacterized protein
STRINGSb02g037860.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP79483443
Representative plantOGRP52481420
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G56780.12e-64effector of transcription2