PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G346800.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | YABBY | ||||||||
Protein Properties | Length: 165aa MW: 17517.1 Da PI: 8.2193 | ||||||||
Description | YABBY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | YABBY | 128.3 | 1e-39 | 13 | 160 | 6 | 167 |
YABBY 6 sseqvCyvqCnfCntilavsvPsts...lfkvvtvrCGhCtsllsvnlakasqllaaeshldeslkeelleelkveeenlksnvekees 91 +e++ yvqCn C til+v vP l+k+v+v+CG C +lsv l + + l+e +v +s +++ e Sobic.002G346800.1.p 13 LPERLGYVQCNLCATILLVGVPCGGtlqLLKTVAVQCGSCCGILSVALPPPAPASVELP----------LQEAGVGPPPRDSDESSGED 91 689*******************8642227899*************99877654333222..........34444444333332222222 PP YABBY 92 astsvsseklsenedeevprvppvirPPekrqrvPsaynrfikeeiqrikasnPdishreafsaaaknWahfPkih 167 +t+ ++ d+++ p v++PP ++qr Psayn+fikeeiqrika P+i+h+eafsaa+knWah+P+i Sobic.002G346800.1.p 92 RETEATV------ADNHA-AFPAVNKPPVRKQRTPSAYNCFIKEEIQRIKARHPSITHKEAFSAASKNWAHLPRIQ 160 2222222......12222.35689**************************************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF04690 | 3.8E-42 | 14 | 160 | IPR006780 | YABBY protein |
SuperFamily | SSF47095 | 2.23E-8 | 109 | 162 | IPR009071 | High mobility group box domain |
Gene3D | G3DSA:1.10.30.10 | 1.6E-6 | 115 | 162 | IPR009071 | High mobility group box domain |
CDD | cd01390 | 8.33E-6 | 117 | 162 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0007275 | Biological Process | multicellular organism development |
Sequence ? help Back to Top |
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Protein Sequence Length: 165 aa Download sequence Send to blast |
MSSSPRHPCF GALPERLGYV QCNLCATILL VGVPCGGTLQ LLKTVAVQCG SCCGILSVAL 60 PPPAPASVEL PLQEAGVGPP PRDSDESSGE DRETEATVAD NHAAFPAVNK PPVRKQRTPS 120 AYNCFIKEEI QRIKARHPSI THKEAFSAAS KNWAHLPRIQ KKGE* |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in leaf sheaths and flowers. {ECO:0000269|PubMed:17216490}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G346800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU963489 | 1e-164 | EU963489.1 Zea mays clone 263245 axial regulator YABBY2 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_021309286.1 | 1e-115 | protein YABBY 7 | ||||
Swissprot | A2PZN8 | 1e-54 | YAB7_ORYSJ; Protein YABBY 7 | ||||
TrEMBL | A0A1B6QF25 | 1e-117 | A0A1B6QF25_SORBI; Uncharacterized protein | ||||
STRING | GRMZM2G046829_P01 | 8e-95 | (Zea mays) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP13625 | 28 | 31 | Representative plant | OGRP13973 | 4 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G26580.2 | 5e-33 | YABBY family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G346800.1.p |