PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G345300.2.p | ||||||||
Common Name | Sb02g036840, SORBIDRAFT_02g036840 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 291aa MW: 32060.2 Da PI: 8.2509 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 17.6 | 1.1e-05 | 262 | 284 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +Cp+C+k F+++ +L+ H + H Sobic.002G345300.2.p 262 VCPKCSKGFRDPVLLVEHVEReH 284 7*****************99888 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF118310 | 3.66E-13 | 4 | 57 | No hit | No description |
PROSITE profile | PS51039 | 7.503 | 10 | 59 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 3.3E-10 | 11 | 51 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 7.8E-14 | 13 | 50 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.0027 | 13 | 52 | IPR000058 | Zinc finger, AN1-type |
Gene3D | G3DSA:4.10.1110.10 | 1.7E-10 | 91 | 146 | IPR000058 | Zinc finger, AN1-type |
SuperFamily | SSF118310 | 5.23E-9 | 93 | 143 | No hit | No description |
PROSITE profile | PS51039 | 7.774 | 98 | 145 | IPR000058 | Zinc finger, AN1-type |
Pfam | PF01428 | 3.5E-8 | 101 | 140 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00154 | 0.073 | 101 | 142 | IPR000058 | Zinc finger, AN1-type |
SMART | SM00355 | 0.14 | 224 | 247 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 226 | 247 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.538 | 261 | 289 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 7.3 | 261 | 284 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 263 | 284 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 291 aa Download sequence Send to blast |
MGTPEFPDLG KHCSVGDCNQ IDFLPFTCDR CDHVFCLQHR SYTSHQCPNA NMKDVTVLIC 60 PLCAKGVRLN PSEDPNITWD THVNTDCDPS NYQKVTKKKK CPVPGCRETL TFSNTIRCKD 120 CTKEHCLKHR FGPDHKCPGP RKVDSGFPFV SMLRRSQKAE TRSNSSNNNG SSWWSSSLVN 180 AATNFKSSAE AGMQKLSTVT SQAFQKAKDG MSPNSSSSSG DLVEQCVHCP ARFSTVGALI 240 EHVEKSHQMN SQPSHGRVTI DVCPKCSKGF RDPVLLVEHV EREHGGTSRV * |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | May be involved in environmental stress response. {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00306 | DAP | Transfer from AT2G41835 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G345300.2.p |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT041206 | 0.0 | BT041206.1 Zea mays full-length cDNA clone ZM_BFc0188K19 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002460884.1 | 0.0 | zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
Swissprot | Q0D5B9 | 1e-171 | SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16 | ||||
TrEMBL | A0A1W0W739 | 0.0 | A0A1W0W739_SORBI; Uncharacterized protein | ||||
STRING | Sb02g036840.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP4763 | 33 | 42 | Representative plant | OGRP1909 | 15 | 20 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT2G41835.1 | 1e-119 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G345300.2.p |
Entrez Gene | 8056366 |
Publications ? help Back to Top | |||
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