PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G345300.2.p
Common NameSb02g036840, SORBIDRAFT_02g036840
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 291aa    MW: 32060.2 Da    PI: 8.2509
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G345300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H217.61.1e-05262284223
                           EETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   2 kCpdCgksFsrksnLkrHirt.H 23 
                           +Cp+C+k F+++ +L+ H  + H
  Sobic.002G345300.2.p 262 VCPKCSKGFRDPVLLVEHVEReH 284
                           7*****************99888 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1183103.66E-13457No hitNo description
PROSITE profilePS510397.5031059IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.103.3E-101151IPR000058Zinc finger, AN1-type
PfamPF014287.8E-141350IPR000058Zinc finger, AN1-type
SMARTSM001540.00271352IPR000058Zinc finger, AN1-type
Gene3DG3DSA:4.10.1110.101.7E-1091146IPR000058Zinc finger, AN1-type
SuperFamilySSF1183105.23E-993143No hitNo description
PROSITE profilePS510397.77498145IPR000058Zinc finger, AN1-type
PfamPF014283.5E-8101140IPR000058Zinc finger, AN1-type
SMARTSM001540.073101142IPR000058Zinc finger, AN1-type
SMARTSM003550.14224247IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280226247IPR007087Zinc finger, C2H2
PROSITE profilePS501578.538261289IPR007087Zinc finger, C2H2
SMARTSM003557.3261284IPR015880Zinc finger, C2H2-like
PROSITE patternPS000280263284IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 291 aa     Download sequence    Send to blast
MGTPEFPDLG KHCSVGDCNQ IDFLPFTCDR CDHVFCLQHR SYTSHQCPNA NMKDVTVLIC  60
PLCAKGVRLN PSEDPNITWD THVNTDCDPS NYQKVTKKKK CPVPGCRETL TFSNTIRCKD  120
CTKEHCLKHR FGPDHKCPGP RKVDSGFPFV SMLRRSQKAE TRSNSSNNNG SSWWSSSLVN  180
AATNFKSSAE AGMQKLSTVT SQAFQKAKDG MSPNSSSSSG DLVEQCVHCP ARFSTVGALI  240
EHVEKSHQMN SQPSHGRVTI DVCPKCSKGF RDPVLLVEHV EREHGGTSRV *
Functional Description ? help Back to Top
Source Description
UniProtMay be involved in environmental stress response. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00306DAPTransfer from AT2G41835Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G345300.2.p
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, dehydration and salt stress. {ECO:0000269|PubMed:17033811}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0412060.0BT041206.1 Zea mays full-length cDNA clone ZM_BFc0188K19 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460884.10.0zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
SwissprotQ0D5B91e-171SAP16_ORYSJ; Zinc finger AN1 and C2H2 domain-containing stress-associated protein 16
TrEMBLA0A1W0W7390.0A0A1W0W739_SORBI; Uncharacterized protein
STRINGSb02g036840.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP47633342
Representative plantOGRP19091520
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41835.11e-119C2H2 family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]