PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G269032.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 336aa    MW: 36041.6 Da    PI: 6.2408
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G269032.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP253.84.7e-17143193153
                   AP2   1 sgykGVrwdkkrgrWvAeIrdpseng.krkrfslgkfgtaeeAakaaiaarkkl 53 
                           + y+GVr++ + grWv+e+r+p   g +  r +lg+f t+e Aa+a++aa+ +l
  Sobic.002G269032.1.p 143 PVYRGVRRRGTLGRWVCEVRVP---GgRGSRLWLGTFTTPELAARAHDAAAIAL 193
                           68*******************9...4455**********************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008478.3E-12143193IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.3E-26144205IPR001471AP2/ERF domain
SuperFamilySSF541712.55E-17144205IPR016177DNA-binding domain
PROSITE profilePS5103220.679144203IPR001471AP2/ERF domain
SMARTSM003807.6E-17144209IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 336 aa     Download sequence    Send to blast
MVADSDRHAH ARRPSWLSRL PLPANRLSLP AALTTGRHQL AACPAPASAP PCTGVDKLPM  60
AIYTFPAAFR SFHPSPSSTA PSIPARLPHT LLLTKLLIFS ESAMDTPSPS PTSSAGHDEY  120
RTVWSAPPKK PAGRTKFRET RHPVYRGVRR RGTLGRWVCE VRVPGGRGSR LWLGTFTTPE  180
LAARAHDAAA IALSRRGACL NFADSAWLLP PLMPAALSAP ELASAREVKD AVAEAVEAFR  240
RCSVAEPTLS SPPNDTADDE EEEDDDDDAV SSPGAVPWND AVFEFEDVFR FGGMVDAGSY  300
YASLAQGLLV DPPDAAGAWR EDVVHATADT VLWSY*
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that binds specifically to the DNA sequence 5'-[AG]CCGAC-3'. Binding to the C-repeat/DRE element mediates high salinity- and dehydration-inducible transcription. Confers resistance to high salt, cold and drought stress (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G269032.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9648285e-51EU964828.1 Zea mays clone 281871 mRNA sequence.
GenBankKJ7277055e-51KJ727705.1 Zea mays clone pUT5644 AP2-EREBP transcription factor (EREB115) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462689.20.0dehydration-responsive element-binding protein 1B
SwissprotQ8GUW43e-63DRE1B_ORYSI; Dehydration-responsive element-binding protein 1B
TrEMBLA0A1W0W6480.0A0A1W0W648_SORBI; Uncharacterized protein
STRINGSb02g030300.11e-165(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP19636261
Representative plantOGRP1909422
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25480.11e-27dehydration response element B1A