PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G259600.1.p
Common NameSb02g029460, SORBIDRAFT_02g029460
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 268aa    MW: 28611.2 Da    PI: 10.4337
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G259600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM114.79.7e-36111451128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikev.diykvePwdLpkkvkaeekewyfFskrdkkyatgkrknr.atksgyWkatg 87 
                           lppGfrFhPtd elvv yL++++ +++l++  vi+ v d+ +++PwdLp    a+e e yfFs  +++ atg+ ++r  + sgyWkatg
  Sobic.002G259600.1.p  11 LPPGFRFHPTDVELVVLYLRRQALARPLPA-AVIPVVhDVARLDPWDLP---GASEGEGYFFSLLRRAPATGRGSRRrRAGSGYWKATG 95 
                           79****************************.8899998***********...3456799*****999999877555546799******* PP

                   NAM  88 kdkevlsk........kgelvglkktLvfykgrapkg.ektdWvmheyrl 128
                           k+k+v+ +        ++ lvg+k+ L+f++ + p + ++t W+mheyrl
  Sobic.002G259600.1.p  96 KEKPVFLQcgggvggkGQLLVGVKTALAFHRSEPPAPsSRTGWIMHEYRL 145
                           *******9888777654555**********9877765169********98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.09E-437178IPR003441NAC domain
PROSITE profilePS5100544.13711178IPR003441NAC domain
PfamPF023651.2E-2112145IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 268 aa     Download sequence    Send to blast
MERPAQAPTQ LPPGFRFHPT DVELVVLYLR RQALARPLPA AVIPVVHDVA RLDPWDLPGA  60
SEGEGYFFSL LRRAPATGRG SRRRRAGSGY WKATGKEKPV FLQCGGGVGG KGQLLVGVKT  120
ALAFHRSEPP APSSRTGWIM HEYRLAVSRG VAEQREKNAS QGCVAAPGEW VVCRVFLKNG  180
ARSRPNRDAN SKALGHRASA APPQPPPQHR EDVGGRRQQP LLLSSSQSSS SSCVTGATDL  240
ADQDDEVSGG GGGISRDTPA DPQREAY*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-2921806170Stress-induced transcription factor NAC1
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.88410.0root
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G259600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKM0170080.0KM017008.1 Miscanthus lutarioriparius NAC10 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460497.10.0NAC domain-containing protein 83
TrEMBLC5X5A10.0C5X5A1_SORBI; Uncharacterized protein
STRINGSb02g029460.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP128052735
Representative plantOGRP1312545
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G13180.15e-25NAC domain containing protein 83