PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G232900.1.p
Common NameSb02g027210, SORBIDRAFT_02g027210
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 339aa    MW: 35960.4 Da    PI: 5.4443
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G232900.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.74.9e-14121172155
                           CHHHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   1 rrrahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                           +r+ h ++Er+RR+++N+ ++ Lr+l+P+a   +s++ + a+i+  A++++k+L+
  Sobic.002G232900.1.p 121 QRMIHIAVERNRRKQMNEYLAALRSLMPPA---YSQRGDQASIVGGAINFVKELE 172
                           6999**************************...*******************995 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000831.74E-14119176No hitNo description
PROSITE profilePS5088815.669120171IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.7E-17120187IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.9E-11121172IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-13122185IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003539.9E-12126177IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 339 aa     Download sequence    Send to blast
MALEAALVLS QQQSSSQQGS RFGCGAMAAG GPWSSLLFSG IEEVVEMGGA AGAAGSWNAA  60
ACSPPQLLQE LGDNTAAGAL PAASGRCASG GAGQDAPAPA PGRRKRRRMR PVKNEEEVES  120
QRMIHIAVER NRRKQMNEYL AALRSLMPPA YSQRGDQASI VGGAINFVKE LEQLLQSLEA  180
QRRSSQRPAD DVDPDDAGPF ADFFTFPQYS MCAVVAGAAP ENKNADHREG AGGAEEEASG  240
SKPSAVADVE ATMVESHANL RVLSRRRPRQ LLRLVLGLQG HRLTVLHLNM SSAGHMVLYS  300
FSLKVEDDCQ LTSVDEIAAA AHQIVEKINE EQGCSLLE*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1103107RKRRR
2121132RMIHIAVERNRR
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G232900.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9722040.0EU972204.1 Zea mays clone 377384 DNA binding protein mRNA, complete cds.
GenBankKJ7279890.0KJ727989.1 Zea mays clone pUT6109 bHLH transcription factor (bHLH33) mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460373.10.0transcription factor bHLH94
SwissprotQ9C7T44e-71BH096_ARATH; Transcription factor bHLH96
TrEMBLC5X3140.0C5X314_SORBI; Uncharacterized protein
STRINGSb02g027210.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP74138156
Representative plantOGRP25315131
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G61950.29e-32bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ezer D, et al.
    The G-Box Transcriptional Regulatory Code in Arabidopsis.
    Plant Physiol., 2017. 175(2): p. 628-640
    [PMID:28864470]