PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G174300.1.p
Common NameSb02g022290, SORBIDRAFT_02g022290
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 329aa    MW: 34604.5 Da    PI: 6.4518
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G174300.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY83.22.5e-26141201158
                           ---SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS CS
                  WRKY   1 ldDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnh 58 
                           +dDg++WrKYGqKe+ g+++pr+YYrCt++   gCp++k+v+r++ed ++ +++Y+geH++
  Sobic.002G174300.1.p 141 VDDGHSWRKYGQKEILGAKHPRGYYRCTHRhsqGCPATKQVQRTDEDATLYDVIYHGEHTC 201
                           59***************************98999*************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.802.9E-28129201IPR003657WRKY domain
PROSITE profilePS5081121.884136199IPR003657WRKY domain
SuperFamilySSF1182901.19E-24139201IPR003657WRKY domain
SMARTSM007742.2E-38141203IPR003657WRKY domain
PfamPF031062.8E-26142201IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 329 aa     Download sequence    Send to blast
MATTEMEMGM GVVVGGGSNS NNGGGSSSSS GLVVTELSHI KELVRQLEVH LGGSPDLCKH  60
LASQIFSLTE RSIGLITSSN LDAGAARRKR SASDAAGLAS PLSATPTSDV TDGPFKNNTK  120
KRKVMGQRRE RVSSAGGENP VDDGHSWRKY GQKEILGAKH PRGYYRCTHR HSQGCPATKQ  180
VQRTDEDATL YDVIYHGEHT CVHRPAVPAE HNADAHAHLQ TLSAGLTVKT EGLPTAATPL  240
YLSASTPLAP ASTASENWGV VSPATSDSNH VAASYLPFDD AEWRGHAELQ EVVSALVAAS  300
APPPPPLPPA VDSLDDLLFD IDIASYFA*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6ir8_A2e-23141201868OsWRKY45
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.106220.0callus| leaf
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G174300.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9641350.0EU964135.1 Zea mays clone 276127 hypothetical protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002460069.10.0probable WRKY transcription factor 54
TrEMBLC5XAG00.0C5XAG0_SORBI; Uncharacterized protein
STRINGSb02g022290.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP108638131
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G23810.14e-33WRKY family protein