PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G168300.2.p
Common NameSb02g021226, SORBIDRAFT_02g021226
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 1585aa    MW: 177448 Da    PI: 7.3024
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G168300.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM56.21.2e-171153126017127
                   NAM   17 eyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekew.yfFskrdkkyatgkrknratksgyWkatgkdkevlskkgelvgl 102 
                              L++k++++  +++  i+ vd+y+++Pw+L+++  ++++ +  fF +  ++  +g  + + t sgyWk tg    ++s ++ +vg+
  Sobic.002G168300.2.p 1153 LLLRNKLDNQCDDITYSIPIVDVYSYDPWNLESS-GSTHRGLlLFFRPLPEA--RGVVPVK-TPSGYWKVTGLPGYIYSDERLAVGM 1235
                            56899999999999777**************844.44455553788887775..4666666.899**************99999*** PP

                   NAM  103 kktLvfykgrapkgektdWvmheyr 127 
                            k+t+ fy+ +  +g+kt+W ++e++
  Sobic.002G168300.2.p 1236 KRTMEFYHDHLTSGTKTKWKIKEFT 1260
                            ***********************97 PP
2WRKY73.92e-2313531412159
                            ---SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY    1 ldDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59  
                            ++Dgy+WrKYG K++ gs++pr YY+Ct++ gCp++k+++r + +p + ++ Y geH ++
  Sobic.002G168300.2.p 1353 VNDGYTWRKYGSKQILGSNYPRDYYKCTQRrGCPARKHMQRRDGEPILYDVCYFGEHSCD 1412
                            58***************************99**************************996 PP
3WRKY581.9e-1814871548259
                            --SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SS.STTEEEEEEES--SS- CS
                  WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversae.dpkvveitYegeHnhe 59  
                            dDgy+W KYGqK++ g+++p sYYrC++    gC+++k++ r+++ d+  ++ +Y g+H+++
  Sobic.002G168300.2.p 1487 DDGYSWTKYGQKNILGAKHPISYYRCAHWiaqGCTATKRLHRKEDaDTLGFDAIYYGQHTCD 1548
                            8**************************97778*********98742666799********97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF525401.56E-48321592IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3003.5E-14335504IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009313.4E-49352620IPR002182NB-ARC
PRINTSPR003647.4E-11358373No hitNo description
PRINTSPR003647.4E-11430444No hitNo description
PRINTSPR003647.4E-11527541No hitNo description
SuperFamilySSF520584.76E-216871058IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.101.2E-127351057IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514504.909772792IPR001611Leucine-rich repeat
PROSITE profilePS514507.227833854IPR001611Leucine-rich repeat
PROSITE profilePS5100520.01111371288IPR003441NAC domain
SuperFamilySSF1019413.92E-1811521287IPR003441NAC domain
PfamPF023654.4E-511541260IPR003441NAC domain
Gene3DG3DSA:2.20.25.805.2E-2313471413IPR003657WRKY domain
SuperFamilySSF1182905.89E-2213491413IPR003657WRKY domain
SMARTSM007744.2E-2813531413IPR003657WRKY domain
PfamPF031063.2E-2213541412IPR003657WRKY domain
PROSITE profilePS5081121.26413541414IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.2E-2014741549IPR003657WRKY domain
SuperFamilySSF1182907.19E-1714831549IPR003657WRKY domain
SMARTSM007744.4E-2514861549IPR003657WRKY domain
PfamPF031061.8E-1914871548IPR003657WRKY domain
PROSITE profilePS5081115.75514871550IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1585 aa     Download sequence    Send to blast
MSSMEAPSPT TSPLDGSILK LPGKLDRLLH QRHRYGCILP KGVEDEIPLI KGDLEEIMAM  60
LSNLDDYEAM MVRCWRKEVR ELSYDMEDYF IDQYEHTSAA ESSLSLMMMT GSVSRRQRRN  120
KSKTTVSRLG DKILIANNKM RESRVRAQEL FQRYMSMYNR DAAAVPVSGS SSTSRCHHSN  180
STPRGGEEKN LDDHHAMKEA LELSYDMENF IEHYGLLTPE SLLAAAGSIS VRSRRQVTHH  240
QRPSRKSKTI ILSRLGEKLR QRLCMANMIR EFSLRAQEAL GRYNTYKLDA ISAGPAASSI  300
RSCTTTDDGV YSGSSWKWNS TTSTCEDDVI VGISAAMENL QELLLTMHDE GHQQNLKVVS  360
IVGSGGIGKT TVAMELYRKL GHQFDCRAFV RTSQEPDMRR IFVSMLSQIG PHQPPDNWTI  420
HSLISTIRAH LRDKRYLIVV EDLCATSTWD IVKRALPDTN CCSRILTTTE IEDLALQSCD  480
HDPKYVYKMK PLGEDDSRTL FFSSIFGPQH ECHSELREIS HAIISKCGGL PLAIVTVAGV  540
LSSKPGLADQ WDYVNKSIGY SLSINPTSEG MKQVLDLSFN ILPQHLKACI LYTGLYEEDI  600
IIWKDDLVNQ WIAEGFIEAT EGQDKKEIAR SFFDRLISRK LILPVCINKN GEVLSCVVHR  660
MVLNLVIRYK SVEENFVTAI HHSQTITTLS DKVRRLSLQF GNAEDVILPI NMRLSQVRTL  720
VFWGVFKCSP TIVLFHLLQV LILHFWGDKD NINFDLTRIS ELFRLRYLKV TSNVTLELGN  780
KIRGLQSLET LTIDARVNTV PSEIVYLPSL LHFSVLPETD LPNGIGHMTS LHTLGYFDLS  840
SNSIENVQSL SMLTNLVDLK LTCSTGQPEN MYNKMQFLLT SILGRLSNLK SLTLVPRAST  900
NNAKSTDEAG ATGMAISGGF SSLSSAPGLL QSLEVSPQIC IFYWIPKWIG QLHKLRILKI  960
GLTKIDRDDV DVIRGLTALA VLSLYSQTKP AARIVVGKTG FPVIKYFKFK CCDPLLKFEE  1020
GSMPNLCKLK LVFNANHAHQ HITIPVGIRY LSNLKELSAK IGGAGSDESH RRAIELAFRD  1080
AVRVHARCER VSIQCVQQII GGKDDQYSLG RVEDYGDEED SDELVEMMPE HYGEAVDTDA  1140
DNRSLLSELH ILLLLRNKLD NQCDDITYSI PIVDVYSYDP WNLESSGSTH RGLLLFFRPL  1200
PEARGVVPVK TPSGYWKVTG LPGYIYSDER LAVGMKRTME FYHDHLTSGT KTKWKIKEFT  1260
AFQHATAGEI CTPMMPRSEM SLCQLYTELA ANPDCSPAGV QYDEKLSVKQ NKIPAEEPSV  1320
ESDIVQTRKH ADKRKRRVDE TTKTVVTIAS PDVNDGYTWR KYGSKQILGS NYPRDYYKCT  1380
QRRGCPARKH MQRRDGEPIL YDVCYFGEHS CDLQQGHSSE QGSETNTISG GWEAAGLPLS  1440
VPHAHGISSV EAMISSGSLT ARPNPGVSSL RPSSMVTSQV VMSNPDDDGY SWTKYGQKNI  1500
LGAKHPISYY RCAHWIAQGC TATKRLHRKE DADTLGFDAI YYGQHTCDQI AHSTDNISSP  1560
LGCTTTGSTS KLGTDKIHPE QGGL*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j5t_C2e-39330667160496Disease resistance RPP13-like protein 4
6j5t_F2e-39330667160496Disease resistance RPP13-like protein 4
6j5t_G2e-39330667160496Disease resistance RPP13-like protein 4
6j5t_L2e-39330667160496Disease resistance RPP13-like protein 4
6j5t_O2e-39330667160496Disease resistance RPP13-like protein 4
6j5u_A2e-39330667160496Disease resistance RPP13-like protein 4
6j5v_A2e-39330667160496Disease resistance RPP13-like protein 4
6j5w_A2e-39330667160496Disease resistance RPP13-like protein 4
6j6i_C2e-39330667160496Disease resistance RPP13-like protein 4
6j6i_F2e-39330667160496Disease resistance RPP13-like protein 4
6j6i_G2e-39330667160496Disease resistance RPP13-like protein 4
6j6i_L2e-39330667160496Disease resistance RPP13-like protein 4
6j6i_O2e-39330667160496Disease resistance RPP13-like protein 4
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.96480.0leaf| panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G168300.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462195.10.0uncharacterized protein LOC8071916
RefseqXP_021308502.10.0uncharacterized protein LOC8071916
TrEMBLC5X9Q60.0C5X9Q6_SORBI; Uncharacterized protein
STRINGSb02g021226.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G01080.11e-20WRKY DNA-binding protein 58