PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G165700.1.p
Common NameSb02g020910, SORBIDRAFT_02g020910
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family ERF
Protein Properties Length: 283aa    MW: 31497.3 Da    PI: 4.5074
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G165700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP251.52.6e-1672121154
                   AP2   1 sgykGVrwdkkrgrWvAeIrd.psengkr.krfslgkfgtaeeAakaaiaarkkle 54 
                           s+++GVr ++ +grW+AeIrd +     r +r ++g+++++e Aa+a+ a++++++
  Sobic.002G165700.1.p  72 SRFRGVRKRP-WGRWAAEIRDpV-----RkTRKWIGSYDSEEAAAAAYQAYANQIR 121
                           789*******.**********44.....55**********9999999999999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF541711.96E-1572123IPR016177DNA-binding domain
PfamPF008471.8E-1072121IPR001471AP2/ERF domain
CDDcd000181.90E-1572107No hitNo description
SMARTSM003803.2E-1573134IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.104.5E-1973122IPR001471AP2/ERF domain
PROSITE profilePS5103218.68973130IPR001471AP2/ERF domain
PRINTSPR003671.8E-77485IPR001471AP2/ERF domain
PRINTSPR003671.8E-796112IPR001471AP2/ERF domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 283 aa     Download sequence    Send to blast
MLPTVQKVRI FCADPDATDS SDDEEDKNIA EKKMVREVLV PVTNSKTSNS LKTLVPCGTK  60
DQEVSEKKGK SSRFRGVRKR PWGRWAAEIR DPVRKTRKWI GSYDSEEAAA AAYQAYANQI  120
RDEVLAIKTK QSVSERAPLS SSSSVSCVSS SALCEQTAHE PQNRVLVEKD PEPVDEVFLN  180
FSPTPKEISM DDLLGRIDEI PVCDSVRPAD DLPLDNFKRL QDAFPISDFI GPGDDHLYDH  240
YIGLADISHL PLPMNEPAFN LDAELDWSGF DFAAIERELD VL*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G165700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0386690.0BT038669.1 Zea mays full-length cDNA clone ZM_BFb0307D12 mRNA, complete cds.
GenBankBT0612680.0BT061268.1 Zea mays full-length cDNA clone ZM_BFb0128H07 mRNA, complete cds.
GenBankBT0686290.0BT068629.1 Zea mays full-length cDNA clone ZM_BFb0353E24 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002462169.10.0pathogenesis-related genes transcriptional activator PTI6
RefseqXP_021308181.10.0pathogenesis-related genes transcriptional activator PTI6
TrEMBLC5X9310.0C5X931_SORBI; Uncharacterized protein
STRINGSb02g020910.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP50203763
Representative plantOGRP1310845
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.12e-15cytokinin response factor 1