PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G153100.1.p
Common NameSb02g018870, SORBIDRAFT_02g018870
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bZIP
Protein Properties Length: 426aa    MW: 46934.5 Da    PI: 8.2841
Description bZIP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G153100.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1bZIP_135.91.6e-11140168533
                           CHHHCHHHHHHHHHHHHHHHHHHHHHHHH CS
                bZIP_1   5 krerrkqkNReAArrsRqRKkaeieeLee 33 
                           k  rr+++NReAAr+sR+RKka+i++Le+
  Sobic.002G153100.1.p 140 KTLRRLAQNREAARKSRLRKKAYIQQLET 168
                           788************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003386.1E-6136191IPR004827Basic-leucine zipper domain
Gene3DG3DSA:1.20.5.1701.2E-8137180No hitNo description
PROSITE profilePS502178.829138181IPR004827Basic-leucine zipper domain
PfamPF001701.5E-8140169IPR004827Basic-leucine zipper domain
SuperFamilySSF579591.97E-7140174No hitNo description
PROSITE patternPS000360143158IPR004827Basic-leucine zipper domain
PfamPF141448.4E-28223296IPR025422Transcription factor TGA like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 426 aa     Download sequence    Send to blast
MMAASSTMSK ESASYDMAEF DQSAIFLYLE DGHDQEQQRQ TLNIFPSQPM HVAEPIPAKG  60
VSMGMVTASM LPNGNSSSPK RQEQGGQHRS VAAPAGPVVP LPSNNLAKDN RNSLTKKEET  120
SGGKGAASAG IVQERVKDPK TLRRLAQNRE AARKSRLRKK AYIQQLETSR IRLSQLEQQV  180
QVARVQGVFL GTGEQPGFSS APSPAAVFDV EYGRWVEEHS KLMFQLRAAL SEHLADEQLQ  240
SFVNGGMAQH EELLNLKGAM ARADVFHLLS GVWVSPAERC FLWLGGFRPS EVIKVMLKHV  300
EPLSEGQILG IYQLQQLVQE REEALNHSME ATQQNISDIV AAPDVAPATF MGHMSLAMNK  360
VAAMESFVMQ ADGLRQQTLH KLHHILTTRQ AARCLLAIAD YFHRLRALST LWVARPRQDD  420
GPGLQ*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.89630.0root| shoot
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator involved in defense response. {ECO:0000250|UniProtKB:Q7X993}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G153100.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459956.10.0transcription factor TGAL7 isoform X2
SwissprotQ6H4340.0TGAL7_ORYSJ; Transcription factor TGAL7
TrEMBLA0A1W0W4970.0A0A1W0W497_SORBI; Uncharacterized protein
STRINGSb02g018870.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP27323669
Representative plantOGRP1617233
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G06839.31e-122bZIP family protein
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Chern M, et al.
    Interaction specificity and coexpression of rice NPR1 homologs 1 and 3 (NH1 and NH3), TGA transcription factors and Negative Regulator of Resistance (NRR) proteins.
    BMC Genomics, 2014. 15: p. 461
    [PMID:24919709]