PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G137200.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 580aa    MW: 64178.7 Da    PI: 6.1745
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G137200.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.00066687223
                          EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                          kC++C++ F +  n++rH r+H
  Sobic.002G137200.2.p 66 KCTKCSREFCSAINFRRHTRVH 87
                          7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.5776587IPR007087Zinc finger, C2H2
PROSITE patternPS0002806787IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 580 aa     Download sequence    Send to blast
MNASRKSNHV SSKDSAETAR DIITTSGQIQ PLKIPDAVAA LAQAAAKAND LPGWPLFSPP  60
KVQLDKCTKC SREFCSAINF RRHTRVHRRT LKIDRDFPKN RDLLAAFWNK LTVDDASTIL  120
SLTGVVVEGV TGSSILIALS SWMCKPGYAS LPMAYARAGS ELLDLIQTKA AMHLPVSSDE  180
LFSLLDEASE KTFLCTNTAA CIQKFLFDGE VDKIATELKN VVSCISYMLE QKLVEAWCAD  240
KTAEALRCQK LLEEEEEAAQ KRQAELMERK RMKKLRQKEQ RLKNLKDEDV TVQSPEIMDD  300
ATCSTAIQSV KSISDPDRFE QEESQYLQFP APITSEIDNG FNVDLSVEDI SCDLGLEMDK  360
GVVLRQHVSR RRLGRTERLA ENSIVPGPVV TSKHPAFVRP SNYKDPNVCS TPSRNKSCAL  420
KLQSEIEEQC QKHELDVDEH GMGPSKNSRV LIGSISVAIE DGSEHLQDIR SKNDPVPPSS  480
KTVKHASVKV MQPVTHEGNR NEGIPHSDSN STPAAENCSQ SSVTTDEISY STYCSADLAV  540
DEHLQRTMFS SKEATAFLSQ RWKEAIAADH VKLVLCPEK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1267274ERKRMKKL
2272282KKLRQKEQRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G137200.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0618680.0BT061868.1 Zea mays full-length cDNA clone ZM_BFb0191I11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459855.20.0uncharacterized protein LOC8062560
TrEMBLA0A1B6QB360.0A0A1B6QB36_SORBI; Uncharacterized protein
STRINGSb02g012410.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.12e-88C2H2-like zinc finger protein