PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G137200.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 585aa    MW: 64771.4 Da    PI: 6.1758
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G137200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H212.10.000617192223
                          EETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2  2 kCpdCgksFsrksnLkrHirtH 23
                          kC++C++ F +  n++rH r+H
  Sobic.002G137200.1.p 71 KCTKCSREFCSAINFRRHTRVH 92
                          7*******************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501579.5777092IPR007087Zinc finger, C2H2
PROSITE patternPS0002807292IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 585 aa     Download sequence    Send to blast
MNASRKSNHV SSKDSAETAR DIITTSGQIQ PLKIPDAVAA LAQAAAKANG ETEKYLPGWP  60
LFSPPKVQLD KCTKCSREFC SAINFRRHTR VHRRTLKIDR DFPKNRDLLA AFWNKLTVDD  120
ASTILSLTGV VVEGVTGSSI LIALSSWMCK PGYASLPMAY ARAGSELLDL IQTKAAMHLP  180
VSSDELFSLL DEASEKTFLC TNTAACIQKF LFDGEVDKIA TELKNVVSCI SYMLEQKLVE  240
AWCADKTAEA LRCQKLLEEE EEAAQKRQAE LMERKRMKKL RQKEQRLKNL KDEDVTVQSP  300
EIMDDATCST AIQSVKSISD PDRFEQEESQ YLQFPAPITS EIDNGFNVDL SVEDISCDLG  360
LEMDKGVVLR QHVSRRRLGR TERLAENSIV PGPVVTSKHP AFVRPSNYKD PNVCSTPSRN  420
KSCALKLQSE IEEQCQKHEL DVDEHGMGPS KNSRVLIGSI SVAIEDGSEH LQDIRSKNDP  480
VPPSSKTVKH ASVKVMQPVT HEGNRNEGIP HSDSNSTPAA ENCSQSSVTT DEISYSTYCS  540
ADLAVDEHLQ RTMFSSKEAT AFLSQRWKEA IAADHVKLVL CPEK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1272279ERKRMKKL
2277287KKLRQKEQRLK
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G137200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0618680.0BT061868.1 Zea mays full-length cDNA clone ZM_BFb0191I11 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459855.20.0uncharacterized protein LOC8062560
TrEMBLA0A1B6QB400.0A0A1B6QB40_SORBI; Uncharacterized protein
STRINGSb02g012410.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP85032430
Representative plantOGRP36431115
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G25610.12e-88C2H2-like zinc finger protein