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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
Sobic.002G137200.1.p |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family |
C2H2 |
Protein Properties |
Length: 585aa MW: 64771.4 Da PI: 6.1758 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
Sobic.002G137200.1.p | genome | JGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 12.1 | 0.00061 | 71 | 92 | 2 | 23 |
EETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23
kC++C++ F + n++rH r+H
Sobic.002G137200.1.p 71 KCTKCSREFCSAINFRRHTRVH 92
7*******************99 PP
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Sequence ? help Back to Top |
Protein Sequence Length: 585 aa
Download sequence Send
to blast |
MNASRKSNHV SSKDSAETAR DIITTSGQIQ PLKIPDAVAA LAQAAAKANG ETEKYLPGWP 60 LFSPPKVQLD KCTKCSREFC SAINFRRHTR VHRRTLKIDR DFPKNRDLLA AFWNKLTVDD 120 ASTILSLTGV VVEGVTGSSI LIALSSWMCK PGYASLPMAY ARAGSELLDL IQTKAAMHLP 180 VSSDELFSLL DEASEKTFLC TNTAACIQKF LFDGEVDKIA TELKNVVSCI SYMLEQKLVE 240 AWCADKTAEA LRCQKLLEEE EEAAQKRQAE LMERKRMKKL RQKEQRLKNL KDEDVTVQSP 300 EIMDDATCST AIQSVKSISD PDRFEQEESQ YLQFPAPITS EIDNGFNVDL SVEDISCDLG 360 LEMDKGVVLR QHVSRRRLGR TERLAENSIV PGPVVTSKHP AFVRPSNYKD PNVCSTPSRN 420 KSCALKLQSE IEEQCQKHEL DVDEHGMGPS KNSRVLIGSI SVAIEDGSEH LQDIRSKNDP 480 VPPSSKTVKH ASVKVMQPVT HEGNRNEGIP HSDSNSTPAA ENCSQSSVTT DEISYSTYCS 540 ADLAVDEHLQ RTMFSSKEAT AFLSQRWKEA IAADHVKLVL CPEK*
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Nucleic Localization
Signal ? help
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No. |
Start |
End |
Sequence |
1 | 272 | 279 | ERKRMKKL |
2 | 277 | 287 | KKLRQKEQRLK |
Annotation --
Nucleotide ? help
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Source |
Hit ID |
E-value |
Description |
GenBank | BT061868 | 0.0 | BT061868.1 Zea mays full-length cDNA clone ZM_BFb0191I11 mRNA, complete cds. |