PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.002G080700.1.p | ||||||||
Common Name | Sb02g006730, SORBIDRAFT_02g006730 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | M-type_MADS | ||||||||
Protein Properties | Length: 242aa MW: 26775.1 Da PI: 4.1343 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 52.2 | 7.7e-17 | 7 | 51 | 1 | 45 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSE CS SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgk 45 k+ien+ +rq+ f+kRr+ ++ KA+E+S+LC+a v i+fs++g+ Sobic.002G080700.1.p 7 KPIENEEQRQICFTKRRQSLFNKASEISILCGAMVGSIVFSTSGT 51 78****************************************997 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00432 | 1.5E-16 | 1 | 58 | IPR002100 | Transcription factor, MADS-box |
PROSITE profile | PS50066 | 19.399 | 1 | 59 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-13 | 1 | 21 | IPR002100 | Transcription factor, MADS-box |
SuperFamily | SSF55455 | 2.22E-19 | 3 | 72 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 6.1E-20 | 9 | 55 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-13 | 21 | 36 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 5.7E-13 | 36 | 57 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 242 aa Download sequence Send to blast |
MVKGEVKPIE NEEQRQICFT KRRQSLFNKA SEISILCGAM VGSIVFSTSG TPFSFGHPSI 60 DDVAKRFLSS VISDGPSSSC ARNDYSWAVP DTIQLLNMEY SELQQALVSE KEKKKMLQEA 120 TKKEMDEPMM QLLNTNISEL SLEELQEFQK YLDAIHGVVE EKDTKMPETS QPQGLVPELP 180 MEIAPDQQYK FGDEHNSANP MAFTAPSSSD IEFIDGLFEV DGPCLSGDLA DVFGLGDFPD 240 N* |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.002G080700.1.p |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002459570.1 | 1e-179 | agamous-like MADS-box protein AGL29 | ||||
TrEMBL | C5XDF6 | 1e-178 | C5XDF6_SORBI; Uncharacterized protein | ||||
STRING | Sb02g006730.1 | 1e-178 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1224 | 36 | 128 | Representative plant | OGRP16 | 17 | 761 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G24840.1 | 8e-22 | AGAMOUS-like 61 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.002G080700.1.p |
Entrez Gene | 8069122 |