PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G078850.1.p
Common NameSb02g006580, SORBIDRAFT_02g006580
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family EIL
Protein Properties Length: 511aa    MW: 52199.6 Da    PI: 4.8101
Description EIL family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G078850.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1EIN361.23.1e-19190332138270
                           TS-HHHHHHHHHHHSSSSSS-TT...S--TTT--HHHH---S--HHHHHHT--TT--..........-----GGG--HHHHHHHHHHHH CS
                  EIN3 138 elqDTtlgSLLsalmqhcdppqr...rfplekgvepPWWPtGkelwwgelglskdqg.........tppykkphdlkkawkvsvLtavi 214
                           ++ +  lg + s+lm  c+pp r   + + ++g +pPWWPtG+e+ww++  l +  +         + p+  +  lkk  kv+vL a +
  Sobic.002G078850.1.p 190 KIENGALGRMISSLMPVCNPPLRqgqHHQSKTGPPPPWWPTGSEDWWATELLEHLDSvaalssapvPVPFAPSYGLKKPQKVAVLVAIV 278
                           5667789999***********8722145677899*************96544332224455666778899999**************** PP

                           HHTGGGHHHHHHTTTTSSSSTTT--SHHHHHHHHHHTTTTT-S--XXXX..XXXXXXX CS
                  EIN3 215 khmsptieeirelerqskylqdkmsakesfallsvlnqeekecatvsah..ssslrkq 270
                           kh++p++++i   +r s     k s  e++ + s ln+e++++++      +++ ++q
  Sobic.002G078850.1.p 279 KHLAPDFARIASAVRHSG----KLSISETDLWHSALNNERAKYTRPVFIllPQQQQQQ 332
                           ***************986....77999*************999876554443333334 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.3180.109.0E-38181319IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
SuperFamilySSF1167681.09E-31186317IPR023278Ethylene insensitive 3-like protein, DNA-binding domain
PfamPF048735.1E-20187313No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 511 aa     Download sequence    Send to blast
MAGKSSNLGA SASSSSSTKM VKPQQEKRKQ LATRAEQAKK QRPFQLINFP ARTRGSGTAT  60
PVVVPPLHRG ASNNMATPAF PFPMPGVNGA APLWSTAAML GAASRAAALT LSSLPATASA  120
NGPAAAPFVV APAPGLQPTP AGAAASNAAA ALALAAGASS ATCVSPPLVL AAVGLPPPAV  180
GIPLAAALGK IENGALGRMI SSLMPVCNPP LRQGQHHQSK TGPPPPWWPT GSEDWWATEL  240
LEHLDSVAAL SSAPVPVPFA PSYGLKKPQK VAVLVAIVKH LAPDFARIAS AVRHSGKLSI  300
SETDLWHSAL NNERAKYTRP VFILLPQQQQ QQGGSVSAPA DGSRGEVVAA AELVVEKELR  360
SDSDGDGDGV GVGVGVGVGV VSATDAPAGD DGLDQPVNNF PAGDGSTDKQ GAAVAAAPTT  420
GHVRQEVEGG PVPEMTMQPP EQDGGVPGDE VAAAAAEDED EDEQVHPVVA PNPNAVAAIE  480
EAPEDRHWWW CDNDELLNRM FGESESFGDD V
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wij_A2e-1918731511130ETHYLENE-INSENSITIVE3-like 3 protein
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G078850.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A1W0W2V60.0A0A1W0W2V6_SORBI; Uncharacterized protein (Fragment)
STRINGSb02g006580.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP15037818
Representative plantOGRP1700323
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G73730.15e-08ETHYLENE-INSENSITIVE3-like 3