PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G029400.1.p
Common NameSb02g002620, SORBIDRAFT_02g002620
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NAC
Protein Properties Length: 344aa    MW: 38215.5 Da    PI: 5.2692
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G029400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM162.31.8e-50291601128
                   NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpk.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgk 88 
                           + pGfrFhPtdeelv++yL++kv+gk+l++ e+ik++diyk++PwdLpk +   +ekewyfF+ r +ky+++ r+nr+t sg+Wkatg 
  Sobic.002G029400.1.p  29 MLPGFRFHPTDEELVTFYLRRKVAGKRLSI-EIIKDFDIYKHDPWDLPKsSSILGEKEWYFFCLRGRKYRNSIRPNRVTGSGFWKATGI 116
                           579***************************.89***************523334899******************************** PP

                   NAM  89 dkevlsk....kgelvglkktLvfykgrapkgektdWvmheyrl 128
                           d++++s+     g  +glkk+Lvfy+g+a kg+kt+W+mhe+rl
  Sobic.002G029400.1.p 117 DRPIHSAasgrAGDPIGLKKSLVFYRGSAGKGTKTEWMMHEFRL 160
                           ******977666677***************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019414.32E-5528187IPR003441NAC domain
PROSITE profilePS5100555.53429187IPR003441NAC domain
PfamPF023652.3E-2531160IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 344 aa     Download sequence    Send to blast
MAKEIVMAGE HGEGEEVVLV EDEEEEEDML PGFRFHPTDE ELVTFYLRRK VAGKRLSIEI  60
IKDFDIYKHD PWDLPKSSSI LGEKEWYFFC LRGRKYRNSI RPNRVTGSGF WKATGIDRPI  120
HSAASGRAGD PIGLKKSLVF YRGSAGKGTK TEWMMHEFRL PPRAESAHTS PSEQEAEVWT  180
ICRIFRRNFT YKKHPQQQQI AGSSKVSAAA TAAVVTTQPG ESSSVTGSLE SDTGDEYTND  240
LPQPTQAPAI VDGYDYDYGY GYDQQQGQWN SHALHAAATA PLPSPTMAAF HHSVLSSPAA  300
GGGLDDMYYK DGSSSWDDIG RMVMELTDPS PGVFSFYDTR SYV*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-50211937174Stress-induced transcription factor NAC1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G029400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459331.10.0transcription factor JUNGBRUNNEN 1
TrEMBLC5X9F00.0C5X9F0_SORBI; Uncharacterized protein
STRINGSb02g002620.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP119138129
Representative plantOGRP1715800
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G43000.11e-77NAC domain containing protein 42