PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.002G018250.1.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | GATA | ||||||||
Protein Properties | Length: 238aa MW: 27098.4 Da PI: 9.0604 | ||||||||
Description | GATA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GATA | 23 | 1.1e-07 | 2 | 18 | 15 | 31 |
GATA 15 gpdgnktLCnaCGlyyr 31 gp g++tLCnaCG++yr Sobic.002G018250.1.p 2 GPLGKSTLCNACGVRYR 18 899*************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.50.10 | 7.6E-4 | 2 | 19 | IPR013088 | Zinc finger, NHR/GATA-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 238 aa Download sequence Send to blast |
MGPLGKSTLC NACGVRYRAS PTFNQPKHSY NRLVPEYRSR ESPMFDQSEH SYKHREVLKI 60 RKKQEHPAPP KTRRITNLHK TSLPRIIDNE LLAWPVFSFL PVPDEVRPGS TSCRYLLLDD 120 SPTWKLLFLL PPPPFQFLPL PPPPSFRFLT NCCMIHYNGS YCSNCMVCNN GLCGICWKAG 180 LPRLGQVFDW PSFPKQHQVS DWLVILISGC QIGNWFTPTH GYQIANQFSP THGCQIG* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.002G018250.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A1W0W1Y7 | 1e-175 | A0A1W0W1Y7_SORBI; Uncharacterized protein |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP7273 | 26 | 46 | Representative plant | OGRP68 | 17 | 287 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G60530.1 | 1e-13 | GATA transcription factor 4 |
Link Out ? help Back to Top | |
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Phytozome | Sobic.002G018250.1.p |