PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.002G001700.1.p
Common NameSb02g000330, SORBIDRAFT_02g000330
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 326aa    MW: 35524.5 Da    PI: 5.9372
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.002G001700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H213.80.0001779101123
                           EEETTTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                           y+C+ C + F++   L  H+++H
  Sobic.002G001700.1.p  79 YTCTFCRREFRSAQALGGHMNVH 101
                           9********************99 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.85E-676106No hitNo description
PROSITE profilePS5015711.15779106IPR007087Zinc finger, C2H2
SMARTSM003550.006679101IPR015880Zinc finger, C2H2-like
PROSITE patternPS00028081101IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0044212Molecular Functiontranscription regulatory region DNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 326 aa     Download sequence    Send to blast
MNSTNSAVEQ MAKYYWGMLG AARTTTGGAG AATSSLIRSS WPPPAAHGRS GGEPSWEELA  60
FARDAAGQLG GCVWPPRSYT CTFCRREFRS AQALGGHMNV HRRDRARLRQ CASPSSPPDH  120
DQEPIAAPLP TPELADHHQL LQLQGSPLFR TTKAAVLISG RPACDHHHQN YYNDNREEEE  180
EEEEEEEEAV ITTTCPRYIS TTIIKESKSK VVISIPASTA AAGSIKETAI AIIGEEEEEE  240
EEEIMLAGRR KRRRLVSQPP EPAFTSPPFY DLRLVAASSP KGGVEHDAKV PNNKVTSTSP  300
SSLSPLHHLA GRQEEVDLEL RLGTS*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1njq_A5e-1374101229superman protein
2l1o_A5e-1374101229Transcriptional regulator SUPERMAN
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1247254GRRKRRRL
2249253RKRRR
3250254KRRRL
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.002G001700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9730831e-120EU973083.1 Zea mays clone 393033 zinc finger, C2H2 type family protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002459195.10.0zinc finger protein 10
TrEMBLC5X7290.0C5X729_SORBI; Uncharacterized protein
STRINGSb02g000330.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP78452943
Representative plantOGRP5761581
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G37740.11e-27zinc-finger protein 10