PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G506066.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family GATA
Protein Properties Length: 185aa    MW: 19380.2 Da    PI: 12.131
Description GATA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G506066.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1GATA57.61.7e-1880113134
                  GATA   1 CsnCgttkTplWRrgpdgnktLCnaCGlyyrkkg 34 
                           C++C + +Tp+WR+gp g++tLCnaCG+++++ +
  Sobic.001G506066.2.p  80 CTHCASEETPQWRQGPAGPSTLCNACGVRFKSGR 113
                           *******************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004013.5E-1574124IPR000679Zinc finger, GATA-type
PROSITE profilePS5011412.01874110IPR000679Zinc finger, GATA-type
SuperFamilySSF577166.18E-1477138No hitNo description
Gene3DG3DSA:3.30.50.102.6E-1478111IPR013088Zinc finger, NHR/GATA-type
CDDcd002027.21E-1479128No hitNo description
PROSITE patternPS00344080105IPR000679Zinc finger, GATA-type
PfamPF003203.0E-1680113IPR000679Zinc finger, GATA-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 185 aa     Download sequence    Send to blast
MDAFPSVETM SAAVEAAPSA PAAGVGRLEP LPHAHAVGPR TKGLRRRRRV TAPWSVPPVL  60
PPAPPLPAPP AGGAAPRRRC THCASEETPQ WRQGPAGPST LCNACGVRFK SGRLFPEYRP  120
ILSPTFSPLL HSNSHRRVME MRRHVEVETA TATATAGGRA GARARRAERA AARAAAAATT  180
TKGK*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G506066.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0184181e-120BT018418.1 Zea mays clone EL01N0356F04.d mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021317517.11e-125GATA transcription factor 7-like
TrEMBLA0A1Z5SBE71e-124A0A1Z5SBE7_SORBI; Uncharacterized protein
STRINGGRMZM2G532534_P011e-71(Zea mays)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G24050.11e-26GATA transcription factor 1