PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G503200.1.p
Common NameSb01g047010, SORBIDRAFT_01g047010
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 558aa    MW: 60037 Da    PI: 7.9512
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G503200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H2171.7e-05446471123
                           EEET..TTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirt.H 23 
                           ++C+  +C+++F++k +L +H ++ +
  Sobic.001G503200.1.p 446 FECNvdYCHMVFKTKAELAVHKKNmC 471
                           89*******************99866 PP
2zf-C2H212.90.00034529553123
                           EEET..TTTEEESSHHHHHHHHHHT CS
               zf-C2H2   1 ykCp..dCgksFsrksnLkrHirtH 23 
                           ykC+   C+k F+  s+++rH r++
  Sobic.001G503200.1.p 529 YKCTtpGCSKIFKFVSDFTRHRRRC 553
                           99*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM0035517446468IPR015880Zinc finger, C2H2-like
SMARTSM003551.7469493IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.136469498IPR007087Zinc finger, C2H2
PROSITE patternPS000280471493IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.608.6E-5474500IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576677.57E-10485527No hitNo description
SMARTSM003550.0023499523IPR015880Zinc finger, C2H2-like
PROSITE profilePS5015711.281499528IPR007087Zinc finger, C2H2
PROSITE patternPS000280501523IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.601.8E-6501519IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SuperFamilySSF576671.22E-7518552No hitNo description
Gene3DG3DSA:3.30.160.609.5E-9520551IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035522529551IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.933529557IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 558 aa     Download sequence    Send to blast
MRIRRYAALL LSSASPGSAT TTAAPSSSPS RPPAASWLHA ADDDCCAFCE LSRPAPQEGQ  60
DAIKHKGHIA GVVPESDVRA DERVGLPQRP PAPEVKKCKI DHVPPVNKAP VGLRVFKRAS  120
EVSGAAVKLE GATPVSEAAV SPAAISGALV VNDAAIEQGV KFRASLPGGE SKLEVSAENS  180
LVNVSTTELG IFKGASLASE LADVPGVTST MPEVTGKPVT DPGVMTTVVE VSDTGSVVHE  240
TTELESARED YIASEAAAEP EDVGRASCNV DDTAALDEPQ PPSCDLSIGN VQAGNAIYTV  300
ASTVQPSQCD AAEGGGSVNS TTNGPVRNRG PTVKEEVPKD KSVAPSVLRV LDAVTRSIGK  360
SGRTDVICYA RRTGKRKMEL LEVKKENIDL EDGDICKKEE TLVRSDRCES VLSTAESIDV  420
KLADIKKDLM DNSAASKVKK MKRNRFECNV DYCHMVFKTK AELAVHKKNM CTVNSCNKHF  480
RSHRYLRRHQ SAHNDDMPYK CPWDGCNMAF KWSWDRAEHF KVHAGAKPYK CTTPGCSKIF  540
KFVSDFTRHR RRCKPQR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6a57_A2e-3944655223129Lysine-specific demethylase REF6
6a58_A2e-3944655223129Lysine-specific demethylase REF6
6a59_A2e-3944655223129Lysine-specific demethylase REF6
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1370376RRTGKRK
2370377RRTGKRKM
3438444KKMKRNR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G503200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002465852.10.0Krueppel-like factor 12 isoform X2
TrEMBLC5WXX20.0C5WXX2_SORBI; Uncharacterized protein
STRINGSb01g047010.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G48430.13e-40relative of early flowering 6