PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G447800.6.p
Common NameSb01g042070, SORBIDRAFT_01g042070
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 293aa    MW: 32704.7 Da    PI: 4.8849
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G447800.6.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH376.1e-12133181355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++iN+++  L++l+P +    +k   Ka++L + ++Y++sLq
  Sobic.001G447800.6.p 133 NSHSLAERFRREKINERMKLLQDLVPGC----NKITGKAMMLDEIINYVQSLQ 181
                           58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000836.24E-11128185No hitNo description
SuperFamilySSF474599.29E-18128196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.796130180IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.6E-18130196IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.0E-9133181IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-10136186IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 293 aa     Download sequence    Send to blast
MMYSPPCTDP DREEEQCFAI GTNLLASLDH TMNFDEPIVF PMNNVGMQEE RTQLYNSTGD  60
AQLSRNMNTG KCLKDGKRKG SGEDSSSLHS LDEASALLQR EVSMECADEK PGDAGAKRED  120
YVHVRAKRGQ ATNSHSLAER FRREKINERM KLLQDLVPGC NKITGKAMML DEIINYVQSL  180
QRQVEFLSMK LSAISPELNC DLDLQDILCT QDASSAFPGY NVQANNVHLN LYRASEEDFS  240
HRIIPNPANV HVTRNAQLSA FPQRGVIWNE ELRSIAPNSF ASDTIADSMK VE*
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed constitutively in roots, leaves, stems, and flowers. {ECO:0000269|PubMed:12679534}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in cell elongation. Regulates the expression of a subset of genes involved in cell expansion by binding to the G-box motif. Binds to chromatin DNA of the FT gene and promotes its expression, and thus triggers flowering in response to blue light (PubMed:24130508). {ECO:0000269|PubMed:23161888, ECO:0000269|PubMed:24130508}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G447800.6.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9715200.0EU971520.1 Zea mays clone 366523 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002468224.20.0transcription factor bHLH74 isoform X1
RefseqXP_021317580.10.0transcription factor bHLH74 isoform X1
RefseqXP_021317585.10.0transcription factor bHLH74 isoform X1
SwissprotQ6NKN91e-44BH074_ARATH; Transcription factor bHLH74
TrEMBLC5WRR20.0C5WRR2_SORBI; Uncharacterized protein
STRINGSb01g042070.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G10120.14e-47bHLH family protein
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]