PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G427600.1.p
Common NameSb01g040170, SORBIDRAFT_01g040170
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C2H2
Protein Properties Length: 456aa    MW: 47555 Da    PI: 8.8026
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G427600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.50.0001210233123
                           EEETTTTEEESSHHHHHHHHHH.T CS
               zf-C2H2   1 ykCpdCgksFsrksnLkrHirt.H 23 
                           ++C+ Cg++  r+++L+ H+ + H
  Sobic.001G427600.1.p 210 FPCKVCGEVLGRPHLLELHQAMkH 233
                           89******************9988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE patternPS000280212233IPR007087Zinc finger, C2H2
SuperFamilySSF563997.48E-12235454No hitNo description
Gene3DG3DSA:3.90.228.105.8E-10237453IPR012317Poly(ADP-ribose) polymerase, catalytic domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003950Molecular FunctionNAD+ ADP-ribosyltransferase activity
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 456 aa     Download sequence    Send to blast
MAGSGGGSLL RGFLSLFFLL FLHIGHASCC FSPGGPAARA REEDEAADGD GDGKVGGGGG  60
GSSKRRKISP LIFSPAASSS AVTSDSVRGG APRRHVSSLA TSLRFYLHRI FSSSSSGSGA  120
KNGGTVAGSR EEEEAVTTTV SSPLAAQSLP HQPSTSVVLS TPSSPCASSP FMSPLSVRSL  180
SATPVPSSPQ KLLQASRQSS RSFAARGDVF PCKVCGEVLG RPHLLELHQA MKHSLSELTH  240
LDSSLNIIRM IFLAGWKPAA ASGAGAGEAP AVRRILRIHH NPRALARFEE YRDLVRARAA  300
RRCGDEGAVV EERCIADGNE RLRFHCSTML CSLGGGGVCG SPYCCVCSTL RHGFAGKQAD  360
VDGIATYASA WAAHASLPGD VEREFAFLQV RRAMLVCRVV AGRVARGPAD DKVAYDSMVP  420
VRGGVSSAVG ADDVELLVYN PRAVLPCFVI LYSSS*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G427600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0664350.0BT066435.1 Zea mays full-length cDNA clone ZM_BFc0163N15 mRNA, complete cds.
GenBankBT0845420.0BT084542.1 Zea mays full-length cDNA clone ZM_BFb0129H01 mRNA, complete cds.
GenBankEU9546110.0EU954611.1 Zea mays clone 1473866 nucleic acid binding protein mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021313429.10.0uncharacterized protein LOC8054291
TrEMBLC5WQ570.0C5WQ57_SORBI; Uncharacterized protein
STRINGSb01g040170.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP105173037
Representative plantOGRP96611112
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G29660.13e-42C2H2 family protein