PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G416200.1.p | ||||||||
Common Name | Sb01g039190, SORBIDRAFT_01g039190 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 198aa MW: 20881.6 Da PI: 7.009 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 10.6 | 0.0017 | 58 | 80 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C++ F++ L H +H Sobic.001G416200.1.p 58 FECKTCNRQFPSFQALGGHRASH 80 89**********99999998887 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.91E-8 | 56 | 125 | No hit | No description |
Pfam | PF13912 | 3.4E-13 | 57 | 82 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.827 | 58 | 85 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.16 | 58 | 80 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 60 | 80 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 5.0E-9 | 102 | 127 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 8.85 | 103 | 130 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 4.8 | 103 | 125 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 105 | 125 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0006979 | Biological Process | response to oxidative stress | ||||
GO:0009408 | Biological Process | response to heat | ||||
GO:0009611 | Biological Process | response to wounding | ||||
GO:0009631 | Biological Process | cold acclimation | ||||
GO:0009643 | Biological Process | photosynthetic acclimation | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0010224 | Biological Process | response to UV-B | ||||
GO:0042538 | Biological Process | hyperosmotic salinity response | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 198 aa Download sequence Send to blast |
MAYGKRTRQK AEEMVWLPDG ADVARFLLLF SGDHQHHYHG AGGVASTDAA SSAPERVFEC 60 KTCNRQFPSF QALGGHRASH KKPRLADGGV DAAAAEPPKP KVHGCSICGL EFAIGQALGG 120 HMRRHRAADQ ADGGSPGLGL GLSLGTGLLA PKDDSGKKTA PPAELVLDLN AVPELEEEQD 180 RARLSIEFPV AVVDFLR* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G416200.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465455.1 | 1e-142 | zinc finger protein ZAT12 | ||||
TrEMBL | C5WPB8 | 1e-140 | C5WPB8_SORBI; Uncharacterized protein | ||||
STRING | Sb01g039190.1 | 1e-141 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP501 | 37 | 157 | Representative plant | OGRP131 | 15 | 149 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 2e-26 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G416200.1.p |
Entrez Gene | 8081474 |