PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.001G398200.2.p | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 326aa MW: 34435.5 Da PI: 4.9991 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 48.8 | 1.6e-15 | 76 | 121 | 4 | 48 |
S-HHHHHHHHHHHHHTTTT..-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 4 WTteEdellvdavkqlGgg..tWktIartmgkgRtlkqcksrwqkyl 48 WT+eEd+ l+++++++G g +W++I ++ gRt++++k++w+++l Sobic.001G398200.2.p 76 WTAEEDQVLANYIAEHGEGswRWSLIVGNLP-GRTDNEIKNHWNSHL 121 *******************************.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 19.596 | 67 | 125 | IPR017930 | Myb domain |
SMART | SM00717 | 4.1E-9 | 72 | 123 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 2.37E-15 | 73 | 126 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 3.0E-13 | 76 | 121 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.7E-17 | 76 | 121 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 5.18E-13 | 76 | 121 | No hit | No description |
Pfam | PF06640 | 3.2E-29 | 212 | 325 | IPR010588 | Myb-related protein P, C-terminal |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 326 aa Download sequence Send to blast |
MGTRERGPPA VVWPATKSAD GGTACWGAAK QGRGSTGTAA EVYYSVISGR ETRADGHGAR 60 AAPCCEKVGL KRARWWTAEE DQVLANYIAE HGEGSWRWSL IVGNLPGRTD NEIKNHWNSH 120 LSRQIHTFRG GKKNTPPGRT TPSPSTRASC AATTSGVAAG PRPRAGRRSK SATSCSKTTK 180 SNQPDPEPEP ESGNAKGASS PATAATSAVH SDGARPGSGF EGPFSEDATG PWELDPIEPR 240 DIWEAESDTD ALMSIGEAQV DDLFYMGWDG FAAHIWGGPS TEVQQAAQPQ AAGPDEHEPQ 300 AADAACTTDE HELEALETWL LSDSF* |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor postulated to regulate the biosynthetic pathway of a flavonoid-derived pigment in certain floral tissues. |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.001G398200.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AY860968 | 0.0 | AY860968.1 Sorghum bicolor yellow seed1 (y1) gene, y1-rr allele, complete cds; and y2 pseudogene, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021313755.1 | 2e-65 | myb-related protein P isoform X1 | ||||
Swissprot | P27898 | 7e-38 | MYBP_MAIZE; Myb-related protein P | ||||
TrEMBL | A0A1Z5S9W1 | 0.0 | A0A1Z5S9W1_SORBI; Uncharacterized protein | ||||
STRING | Pavir.Ib01420.1.p | 1e-63 | (Panicum virgatum) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP79 | 38 | 563 | Representative plant | OGRP5 | 17 | 1784 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G47460.1 | 1e-23 | myb domain protein 12 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.001G398200.2.p |