PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G314900.5.p | ||||||||
Common Name | Sb01g030620, SORBIDRAFT_01g030620 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | TALE | ||||||||
Protein Properties | Length: 624aa MW: 65724 Da PI: 7.0452 | ||||||||
Description | TALE family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 27.2 | 6.7e-09 | 353 | 390 | 19 | 54 |
HHH..SSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHH CS Homeobox 19 Fek..nrypsaeereeLAkklgLterqVkvWFqNrRak 54 Fe ++yps ++ LA+++gL+ +qV++WF N R + Sobic.001G314900.5.p 353 FEHflHPYPSDVDKHILARQTGLSRSQVSNWFINARVR 390 664459******************************88 PP | |||||||
2 | BELL | 92 | 5.7e-30 | 211 | 279 | 3 | 71 |
BELL 3 qelqkkkakLlslleeVdkrYkqyveqlqtvissFeavaglgsakpYtslAlkaiSrhFrcLkdaiaeq 71 elq+ kakL +l+eV++rY++y+eq+++v++sFeavag +a Yt+lA+++iS+hFr+L+d +a q Sobic.001G314900.5.p 211 SELQRLKAKLYAMLQEVERRYRRYREQMRAVAGSFEAVAGEQAAVAYTRLASRTISKHFRSLRDGVAAQ 279 689***************************************************************998 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00574 | 5.6E-42 | 147 | 278 | IPR006563 | POX domain |
Pfam | PF07526 | 1.2E-39 | 153 | 276 | IPR006563 | POX domain |
PROSITE profile | PS50071 | 12.228 | 331 | 394 | IPR001356 | Homeobox domain |
CDD | cd00086 | 1.58E-12 | 334 | 395 | No hit | No description |
SMART | SM00389 | 3.0E-9 | 334 | 398 | IPR001356 | Homeobox domain |
SuperFamily | SSF46689 | 1.67E-17 | 335 | 402 | IPR009057 | Homeodomain-like |
Gene3D | G3DSA:1.10.10.60 | 4.8E-28 | 337 | 400 | IPR009057 | Homeodomain-like |
Pfam | PF05920 | 8.3E-18 | 351 | 390 | IPR008422 | Homeobox KN domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 624 aa Download sequence Send to blast |
MAHDEQAGLA YADYFAAAAA AGAVATLVPE EEEDLHLYGV HHQHGVELFG PSRGHMLPAA 60 TMMAGGHAAA AAHGKAAALG LVDVDVASPV VGGHDFGDHH HRQQGLQAPL SLALHHHHHQ 120 QQLGGGGVPR HNQLSAAWPG PQQQQGQGAA WHLRGSRFLR PTQQLLQEFC TLPVDTTTTA 180 AASKQPASED GVGVGSSTSA PSAQIHAMSA SELQRLKAKL YAMLQEVERR YRRYREQMRA 240 VAGSFEAVAG EQAAVAYTRL ASRTISKHFR SLRDGVAAQM QVVRRALGEK DADGGVPAAG 300 GMVKGETTPR LRVIDQCLRQ HRAYQAGVLE SQPWRPQRGL PERAVSILRA WLFEHFLHPY 360 PSDVDKHILA RQTGLSRSQV SNWFINARVR LWKPMVEEMY SEEMKDPQEG GGGAACSNAN 420 NNSVNTSSYT SELGQQQLGH GGGASGVDGR GGERKPTRAQ LLVHDAGSLA SVVSIGSSSR 480 DQQQQMSSIN FGMMDHLDFD AYNDDPTAAG PGGPAGGFGA GGSGGVSLTL GLQHQHADDP 540 HGGVNIAFAG AAPSAAHEFL FMAGGGEQQM VAGGAVHPSH GHGHGHHGQF SAAGMQGDGV 600 PSSHYHRGLS AATGFQLLHD LAG* |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
4xrs_A | 3e-17 | 340 | 397 | 1 | 58 | Homeobox protein Meis1 |
4xrs_B | 3e-17 | 340 | 397 | 1 | 58 | Homeobox protein Meis1 |
5bng_A | 3e-17 | 340 | 398 | 1 | 59 | Homeobox protein Meis2 |
5bng_B | 3e-17 | 340 | 398 | 1 | 59 | Homeobox protein Meis2 |
Search in ModeBase |
Expression -- UniGene ? help Back to Top | ||||||
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UniGene ID | E-value | Expressed in | ||||
Sbi.129 | 0.0 | root |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G314900.5.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU957060 | 0.0 | EU957060.1 Zea mays clone 1581614 bell-like homeodomain protein 3 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002465020.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_021305140.1 | 0.0 | homeobox protein BEL1 homolog | ||||
Refseq | XP_021305141.1 | 0.0 | homeobox protein BEL1 homolog | ||||
TrEMBL | A0A1Z5S8I1 | 0.0 | A0A1Z5S8I1_SORBI; Uncharacterized protein | ||||
STRING | Sb01g030620.1 | 0.0 | (Sorghum bicolor) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G41410.1 | 6e-77 | TALE family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G314900.5.p |
Entrez Gene | 8062869 |