PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G301700.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family MYB_related
Protein Properties Length: 655aa    MW: 73469.5 Da    PI: 8.4882
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G301700.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding23.11.7e-07596639243
                           SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHH CS
       Myb_DNA-binding   2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksr 43 
                           ++WT+   + lv+a k ++++   +W+++a+ ++ g+t  qck +
  Sobic.001G301700.1.p 596 DAWTEAQVLALVQALKAFPKDasqRWERVAAAVP-GKTVVQCKKK 639
                           58********************************.********76 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF465657.21E-2180175IPR001623DnaJ domain
Gene3DG3DSA:1.10.287.1102.2E-2193199IPR001623DnaJ domain
SMARTSM002712.3E-1596171IPR001623DnaJ domain
CDDcd062579.69E-1397168IPR001623DnaJ domain
PROSITE profilePS5007618.54797179IPR001623DnaJ domain
PfamPF002264.5E-1897176IPR001623DnaJ domain
PRINTSPR006254.0E-8102120IPR001623DnaJ domain
PRINTSPR006254.0E-8120135IPR001623DnaJ domain
PRINTSPR006254.0E-8151171IPR001623DnaJ domain
PROSITE patternPS006360156175IPR018253DnaJ domain, conserved site
PROSITE profilePS500906.33464519IPR017877Myb-like domain
Gene3DG3DSA:1.10.10.608.6E-5466511IPR009057Homeodomain-like
SuperFamilySSF466893.89E-7466513IPR009057Homeodomain-like
SMARTSM007173.9E-4468521IPR001005SANT/Myb domain
CDDcd001679.44E-4471511No hitNo description
SMARTSM007171.1E-5594646IPR001005SANT/Myb domain
SuperFamilySSF466895.76E-8596647IPR009057Homeodomain-like
CDDcd001672.22E-5597639No hitNo description
PfamPF002496.4E-6597639IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.1E-4597639IPR009057Homeodomain-like
PROSITE profilePS500906.179598639IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 655 aa     Download sequence    Send to blast
MESQKSCLLI TYSHEIVDGV PLYVSSNCLP IKALKYEPAG HSFHAAAMKL LGLGQHEDIE  60
TDDRSVSSDD KSQDFNTASD TFSSKGKKKS SGSQQQDHYA LLGLGHLRFL ATEDQIRKSY  120
RDMALKHHPD KQAALILAET TEEAKQAKKD EIESHFKAIQ EAYEVLIDPT KRRIYDSTDE  180
FDDDVPTDCA PQDFFKVFGP AFMRNGRWSV TQPIPSLGDD STAVEEVDKF YNFWYNFKSW  240
REFPDDDEYD LEQAESREHK RWMERQNAKL QEKAKKAEYA RVRTLVDNAY KKDPRIQRRK  300
EEEKAEKQRR KEAKYLAKKL QEEEAARAAE EERIRKEEET KKAAEAAQHQ KKLKEKEKKL  360
LRKEKTRLRT LAAPVVADSH FGMSEEDVES TCAKLDMEQL KKLCDGMDGK DAAEKARLMS  420
SALRNESSSK EVKKVEANGV GSSAPKSNST GGRVTEGSSS ILNSYEKKER PWAKEEVEML  480
RKAMQKYPKG TSRRWEVVSE FIGTNRSVEE ILKATKSVLL QKPDSSKAFD SFLEKRKPAQ  540
SIASPLSTRD EVSSSTEGAG TASSKAAVQA VSSQTANGKA AADPVPDGAP SVADPDAWTE  600
AQVLALVQAL KAFPKDASQR WERVAAAVPG KTVVQCKKKV AAMRENFRSK KTGE*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5dje_A5e-2019329720124Zuotin
5dje_B5e-2019329720124Zuotin
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G301700.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9468800.0EU946880.1 Zea mays clone 324537 mRNA sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304978.10.0dnaJ homolog subfamily C member 2
TrEMBLC5WSF70.0C5WSF7_SORBI; Uncharacterized protein
STRINGGRMZM2G116693_P010.0(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP81193440
Representative plantOGRP38231521
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G11450.11e-123DnaJ domain ;Myb-like DNA-binding domain