PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G287600.1.p
Common NameSb01g028230, SORBIDRAFT_01g028230
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 708aa    MW: 75519.3 Da    PI: 6.5593
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G287600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH391.4e-12529574454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           +h e+Er+RR+++N++f  Lr ++P+       K++Ka+ L  A+ YI++L
  Sobic.001G287600.1.p 529 NHVEAERQRREKLNQRFYALRAVVPNV-----SKMDKASLLGDAISYINEL 574
                           799***********************6.....5***************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF142158.3E-5362242IPR025610Transcription factor MYC/MYB N-terminal
PROSITE profilePS5088817.39525574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.09E-18528596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.92E-14528578No hitNo description
PfamPF000104.7E-10529574IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-19529596IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.6E-16531580IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009269Biological Processresponse to desiccation
GO:0009611Biological Processresponse to wounding
GO:0009737Biological Processresponse to abscisic acid
GO:0009867Biological Processjasmonic acid mediated signaling pathway
GO:0009963Biological Processpositive regulation of flavonoid biosynthetic process
GO:0010200Biological Processresponse to chitin
GO:0043619Biological Processregulation of transcription from RNA polymerase II promoter in response to oxidative stress
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:0051090Biological Processregulation of sequence-specific DNA binding transcription factor activity
GO:2000068Biological Processregulation of defense response to insect
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 708 aa     Download sequence    Send to blast
MNLWTDDNAS MMEAFMASAD LPTFPWGATA GGGNSSAAAA TPPPPPQMPA AAMAPGFNQD  60
TLQQRLQAMI EGSSETWTYA IFWQSSLDAA TGASLLGWGD GYYKGCDDDK RKQRPLTPAA  120
QAEQEHRKRV LRELNSLISG AAAAPDEAVE EEVTDTEWFF LVSMTQSFLN GSGLPGQALF  180
AGQPTWIASG LSSAPCERAR QAYNFGLRTM VCFPVGTGVL ELGSTDVVFQ TAESMAKIRS  240
LFGGGAGGGS WPPPQAPSHQ QPAAGPDQAE TDLWLADAPV MDIKDSMSHP SAEISVSKPP  300
PPPPPPQIHF ENASTSTLTE NPSPSVHAAP PQPAPAAAPQ RQHQHQNQAH QGPFRRELNF  360
SDFASTNPSS LAATPPFFKP ESGEILSFGA DSNARRNPSP APPAATASLT TAPGSLFSQH  420
TATMTQAAAA NDAKNNNKRS MEATSRASNT NHHPAATANE GMLSFSSAPT TRPSTGTGAP  480
AKSESDHSDL DASVREVESS RVVAPPPEAE KRPRKRGRKP ANGREEPLNH VEAERQRREK  540
LNQRFYALRA VVPNVSKMDK ASLLGDAISY INELRGKLTS LESDKDTLQA QIEALKKERD  600
ARPPAHAAGL GGHDGGPRCH AVEIDAKILG LEAMIRVQCH KRNHPSARLM TALRELDLDV  660
YHASVSVVKD LMIQQVAVKM ASRIYSQDQL NAALYSRLAE PGSAMGR*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4rqw_A3e-63552422192Transcription factor MYC3
4rqw_B3e-63552422192Transcription factor MYC3
4rs9_A3e-63552422192Transcription factor MYC3
4yz6_A3e-63552422192Transcription factor MYC3
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1510518KRPRKRGRK
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.157240.0leaf| ovary
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Highly expressed in spikelets and floral organs. {ECO:0000269|PubMed:24647160}.
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator involved in jasmonate (JA) signaling pathway during spikelet development. Binds to the G2 region G-box (5'-CACGTG-3') of the MADS1 promoter and thus directly regulates the expression of MADS1. Its function in MADS1 activation is abolished by TIFY3/JAZ1 which directly target MYC2 during spikelet development. {ECO:0000269|PubMed:24647160}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00084PBMTransfer from AT1G32640Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G287600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF0611070.0AF061107.1 Zea mays transcription factor MYC7E mRNA, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002467448.10.0transcription factor MYC2
SwissprotQ336P50.0MYC2_ORYSJ; Transcription factor MYC2
TrEMBLA0A1B6QMQ50.0A0A1B6QMQ5_SORBI; Uncharacterized protein
STRINGSb01g028230.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP44523157
Representative plantOGRP37331224
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G17880.15e-67bHLH family protein
Publications ? help Back to Top
  1. Rice Chromosome 10 Sequencing Consortium
    In-depth view of structure, activity, and evolution of rice chromosome 10.
    Science, 2003. 300(5625): p. 1566-9
    [PMID:12791992]
  2. Cai Q, et al.
    Jasmonic acid regulates spikelet development in rice.
    Nat Commun, 2014. 5: p. 3476
    [PMID:24647160]