PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G278800.1.p | ||||||||
Common Name | Sb01g027430, SORBIDRAFT_01g027430 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | HD-ZIP | ||||||||
Protein Properties | Length: 255aa MW: 27769.6 Da PI: 8.2339 | ||||||||
Description | HD-ZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Homeobox | 57.9 | 1.7e-18 | 100 | 154 | 2 | 56 |
T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 rk+ +++keq Le++F+++++++ ++++ LA++l+L rqV vWFqNrRa+ k Sobic.001G278800.1.p 100 RKKLRLSKEQSALLEDHFKEHSTLNPKQKAALARQLNLRPRQVEVWFQNRRARTK 154 788899***********************************************98 PP | |||||||
2 | HD-ZIP_I/II | 125.7 | 2.1e-40 | 100 | 188 | 1 | 90 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLre 89 +kk+rlskeq++lLE++F+e+++L+p++K++lar+L+l+prqv+vWFqnrRARtk+kq+E+d+e Lkr++++l+een+rL++e ++Lr Sobic.001G278800.1.p 100 RKKLRLSKEQSALLEDHFKEHSTLNPKQKAALARQLNLRPRQVEVWFQNRRARTKLKQTEVDCELLKRCCETLTEENRRLHRELQQLR- 187 69*************************************************************************************9. PP HD-ZIP_I/II 90 e 90 + Sobic.001G278800.1.p 188 A 188 3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 7.52E-19 | 87 | 157 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50071 | 17.135 | 96 | 156 | IPR001356 | Homeobox domain |
SMART | SM00389 | 5.2E-16 | 98 | 160 | IPR001356 | Homeobox domain |
CDD | cd00086 | 4.26E-16 | 100 | 157 | No hit | No description |
Pfam | PF00046 | 7.2E-16 | 100 | 154 | IPR001356 | Homeobox domain |
Gene3D | G3DSA:1.10.10.60 | 8.0E-18 | 100 | 154 | IPR009057 | Homeodomain-like |
PROSITE pattern | PS00027 | 0 | 131 | 154 | IPR017970 | Homeobox, conserved site |
Pfam | PF02183 | 2.1E-10 | 156 | 189 | IPR003106 | Leucine zipper, homeobox-associated |
SMART | SM00340 | 3.4E-21 | 156 | 199 | IPR003106 | Leucine zipper, homeobox-associated |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MEQEEVGLAL GLSLGSGHHQ QLKEQPPPSS HPCALLEPTL SLSSLPAKDG LTTTPMRRIA 60 AVKRELQVEE DDEATDRALI YSVASSAVVT ADDDEGCNSR KKLRLSKEQS ALLEDHFKEH 120 STLNPKQKAA LARQLNLRPR QVEVWFQNRR ARTKLKQTEV DCELLKRCCE TLTEENRRLH 180 RELQQLRALS HPHPAAAFFM PAAAALSICP SCERIATGAS AAATTTGADR PNKAGGGPVR 240 APHLFSPFTK SAAC* |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 98 | 104 | SRKKLRL |
2 | 148 | 156 | RRARTKLKQ |
Expression -- Description ? help Back to Top | ||||||
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Source | Description | |||||
Uniprot | TISSUE SPECIFICITY: Expressed in seedlings, stems, leaf blades and panicles. {ECO:0000269|PubMed:17999151}. |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G278800.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT054580 | 1e-178 | BT054580.1 Zea mays full-length cDNA clone ZM_BFc0164J19 mRNA, complete cds. | |||
GenBank | EU962030 | 1e-178 | EU962030.1 Zea mays clone 239717 homeobox-leucine zipper protein HAT22 mRNA, complete cds. | |||
GenBank | KJ727618 | 1e-178 | KJ727618.1 Zea mays clone pUT5529 HB transcription factor (HB121) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002464840.1 | 0.0 | homeobox-leucine zipper protein HOX15 | ||||
Swissprot | Q7G737 | 4e-83 | HOX15_ORYSJ; Homeobox-leucine zipper protein HOX15 | ||||
TrEMBL | C5WQI4 | 0.0 | C5WQI4_SORBI; Uncharacterized protein | ||||
STRING | Sb01g027430.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP2055 | 36 | 98 | Representative plant | OGRP196 | 16 | 156 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G37790.1 | 8e-61 | HD-ZIP family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G278800.1.p |
Entrez Gene | 8055099 |
Publications ? help Back to Top | |||
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