PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G180600.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 315aa    MW: 33465 Da    PI: 8.4884
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G180600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF56.73e-181050242
                          ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
                SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
                          ri n+  r  tf kRr+g++KKA EL +LCd++++v+++++
  Sobic.001G180600.1.p 10 RILNDATRRATFRKRRQGLMKKARELATLCDVDACVVVYGE 50
                          8999***********************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.7E-23160IPR002100Transcription factor, MADS-box
PROSITE profilePS5006619.357150IPR002100Transcription factor, MADS-box
CDDcd002666.25E-28285No hitNo description
SuperFamilySSF554551.96E-23395IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-11323IPR002100Transcription factor, MADS-box
PfamPF003191.1E-181057IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-112338IPR002100Transcription factor, MADS-box
PRINTSPR004043.5E-113859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MARKKVNLQR ILNDATRRAT FRKRRQGLMK KARELATLCD VDACVVVYGE GETRPHVWPD  60
VATAAQVLAR FKAMPELDQY KKTMDMEGLL AQRIDKQQEQ LHKARRENHE RETTLLLHDA  120
IVGRCPGLAG VSVENVAGLG WMVENRLVVV NQSLERRRHQ AQAAAGAGKQ QVQGQPPLQD  180
KDDVVVATAP TTLQLQMPPQ QPLVPAYSIS GGGPAGQADV VHQAPPLNPS PDPEPQPSWL  240
MELASAGDLG ALVYSGFSGG RGMSFGGAGG ASTSTSTSTS ASAGAADMLP PHLGNFGAGF  300
GWPDAPGPSS FPPM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1224RKKVNLQRILNDATRRATFRKRR
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G180600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277161e-126KJ727716.1 Zea mays clone pUT5655 MADS transcription factor (MADS64) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464293.20.0agamous-like MADS-box protein AGL80
TrEMBLC5WU720.0C5WU72_SORBI; Uncharacterized protein
STRINGSb01g015720.11e-145(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.13e-33AGAMOUS-like 80