PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G180400.1.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family M-type_MADS
Protein Properties Length: 316aa    MW: 33640.6 Da    PI: 9.4909
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G180400.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF57.91.3e-183272343
                          --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TT CS
                SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifsst 43
                          i n+  r  tf kRr+g++KKA+EL +LCd++++v+++++ 
  Sobic.001G180400.1.p 32 IANDATRRATFKKRRKGLMKKASELATLCDVDACVVVYGEG 72
                          8899**********************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004324.8E-232281IPR002100Transcription factor, MADS-box
PROSITE profilePS5006618.3622271IPR002100Transcription factor, MADS-box
CDDcd002664.29E-3223106No hitNo description
SuperFamilySSF554554.06E-2424116IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-102444IPR002100Transcription factor, MADS-box
PfamPF003191.3E-183271IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-104459IPR002100Transcription factor, MADS-box
PRINTSPR004041.0E-105980IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0043078Cellular Componentpolar nucleus
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MTTISVPPFP SKILHVVAAA AMARKKVTLQ WIANDATRRA TFKKRRKGLM KKASELATLC  60
DVDACVVVYG EGETQPEVWP DVAKAAQVLA RFKAMPELDQ CKKMMDMEGF LTQRIDKLKE  120
QLHKAQRENR ERETTLLLHD AIVGRRPSLV GLSVEDIAGL GWMVENRLVG VKESLERHHH  180
QVQAAGGKQP QGGHQGNAVV PPPTLQLQMP PQVSLQPLMP YNIGGGPAGQ TDGVHHQAPP  240
HPQASSWLME VARAGGDLGA LVYSGFSGGR GSFGGSAGAG TSTSAVAADM LPHLGNFGAG  300
FGWSDPAGPS SFPPM*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
12345RKKVTLQWIANDATRRATFKKRR
24246KKRRK
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00553DAPTransfer from AT5G48670Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G180400.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKJ7277161e-170KJ727716.1 Zea mays clone pUT5655 MADS transcription factor (MADS64) gene, partial cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002464291.20.0agamous-like MADS-box protein AGL80
TrEMBLA0A1B6QJL90.0A0A1B6QJL9_SORBI; Uncharacterized protein
STRINGGRMZM5G839969_P011e-132(Zea mays)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP36336202
Representative plantOGRP11413173
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G48670.14e-32AGAMOUS-like 80