PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Sobic.001G167600.1.p | ||||||||
Common Name | Sb01g014650, SORBIDRAFT_01g014650 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
|
||||||||
Family | LBD | ||||||||
Protein Properties | Length: 298aa MW: 31361.1 Da PI: 6.9896 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 133.3 | 9.9e-42 | 7 | 106 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleq 89 +CaaCk+lrrkC+++Cv+apyfp ++p+kf vh++FGasnv+kll++lp+ +reda++sl+yeAear+rdPvyG+v+ i+ lq +++q Sobic.001G167600.1.p 7 PCAACKLLRRKCTQGCVFAPYFPPDNPAKFSSVHRIFGASNVSKLLNELPQAQREDAVNSLAYEAEARLRDPVYGCVSYISVLQLRIKQ 95 7**************************************************************************************** PP DUF260 90 lkaelallkee 100 +++ela++++e Sobic.001G167600.1.p 96 VREELAAARKE 106 *******9987 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.88 | 6 | 107 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.3E-41 | 7 | 104 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009954 | Biological Process | proximal/distal pattern formation | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0048441 | Biological Process | petal development |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 298 aa Download sequence Send to blast |
MSSSNSPCAA CKLLRRKCTQ GCVFAPYFPP DNPAKFSSVH RIFGASNVSK LLNELPQAQR 60 EDAVNSLAYE AEARLRDPVY GCVSYISVLQ LRIKQVREEL AAARKELAGY IGPAAFTPFV 120 ATPQYHHHQY AAGGVPLAAA AGMGLAVGVG PQHGHHPHHQ QQIMVHQHQH QHLHHQQMAA 180 AEAQQQLAAA VEVAREQDLM MRQAAVYAHA VPGSSGGGGG GGGATVAVVP PDAVPYEGGF 240 LFQQQPPPSQ AQTAVALTYQ MEQSPPPSSS GQSHPEVSQQ QNTDGSDEGS GGVVPPA* |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-48 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-48 | 4 | 110 | 8 | 114 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Sobic.001G167600.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | BT063309 | 2e-68 | BT063309.1 Zea mays full-length cDNA clone ZM_BFc0051C02 mRNA, complete cds. | |||
GenBank | KJ727724 | 2e-68 | KJ727724.1 Zea mays clone pUT5664 LOB transcription factor (LOB38) mRNA, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466819.1 | 0.0 | LOB domain-containing protein 36 | ||||
TrEMBL | C5WSB6 | 0.0 | C5WSB6_SORBI; Uncharacterized protein | ||||
STRING | Sb01g014650.1 | 0.0 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP6143 | 34 | 56 | Representative plant | OGRP60 | 16 | 318 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT5G66870.1 | 5e-53 | ASYMMETRIC LEAVES 2-like 1 |
Link Out ? help Back to Top | |
---|---|
Phytozome | Sobic.001G167600.1.p |
Entrez Gene | 8064496 |