PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G165401.1.p
Common NameSb01g014440, SORBIDRAFT_01g014440
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 338aa    MW: 38104.2 Da    PI: 10.3256
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G165401.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B366.53.7e-21411221299
                           HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            ++rlv+p kfae++  k e+   +tle++ g ++ev++   k+ gr+vl++GWk+Fv+a++Lk  Df+vFk++g +++ ++v +f+ 
  Sobic.001G165401.1.p  41 FHKRLVIPGKFAEHFRDKIEG--SITLESLGGYTFEVQV--AKNFGRIVLQSGWKSFVSAHDLKKMDFLVFKYNG-MSR-MKVLIFDP 122
                           4678********877666455..5***************..*******************************988.444.69999885 PP
2B334.83e-112753364199
                           TTS-EEEEEE..EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                    B3  41 esgrsWevkliyrkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                            +g+sWev+++++ ++++    +l +GW +F+ +n L+ gD+++F+  ++++ +++v+++r+
  Sobic.001G165401.1.p 275 CHGKSWEVTCRIKAGKCQgkfKMLCNGWAQFAGDNYLQLGDILLFEQLKTKKYRMNVHIIRN 336
                           589*******995555555789999*********************88889999*****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.108.9E-2428125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.99930123IPR003340B3 DNA binding domain
SuperFamilySSF1019362.16E-2231130IPR015300DNA-binding pseudobarrel domain
CDDcd100171.54E-2231121No hitNo description
SMARTSM010193.4E-1133123IPR003340B3 DNA binding domain
PfamPF023626.0E-1941121IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.2E-16232336IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.9E-15232335IPR015300DNA-binding pseudobarrel domain
CDDcd100171.67E-11235335No hitNo description
SMARTSM010190.013237337IPR003340B3 DNA binding domain
PfamPF023623.3E-9273336IPR003340B3 DNA binding domain
PROSITE profilePS5086310.715276337IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 338 aa     Download sequence    Send to blast
MYGTKMRKPS KGCNKGNANC QWSDRTDDHG KHFFKILIGD FHKRLVIPGK FAEHFRDKIE  60
GSITLESLGG YTFEVQVAKN FGRIVLQSGW KSFVSAHDLK KMDFLVFKYN GMSRMKVLIF  120
DPSGCEKVPP CFVTKNAING GKKREEAIVI ASGDANNHPM RAPETKKKAL KQRDRSRIII  180
SSSRSLSKSS GGMTSSEDDE ACSAPSYMLP QGASLDNIQQ KKVKERGRAI CSEIPIYVCV  240
VKKSNISGRS QAMDFSRKYS DVCLPFKSKR WILQCHGKSW EVTCRIKAGK CQGKFKMLCN  300
GWAQFAGDNY LQLGDILLFE QLKTKKYRMN VHIIRNE*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G165401.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_008644655.11e-162putative B3 domain-containing protein Os03g0621600
TrEMBLA0A1Z5S6A20.0A0A1Z5S6A2_SORBI; Uncharacterized protein
STRINGSb01g014440.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.15e-25B3 family protein