PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G165100.5.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 314aa    MW: 35621.9 Da    PI: 9.5149
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G165100.5.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.87.3e-17351141297
                           HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            + rl +p kf  +h  g++   +  ++le++ g +++ ++   k+ g++vl++GWkeFv a++L+ gDf+vFk dg+s+   +v +f
  Sobic.001G165100.5.p  35 FRERLAVPDKFE-QHfrGLI---GNRVKLESRCGHTFDAEV--AKNLGKVVLQTGWKEFVTAHDLNMGDFLVFKCDGTSRL--KVFIF 114
                           456899*****6.5556555...457***************..*******************************7775554..66665 PP
2B3505.3e-162263121199
                           HHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE...EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
                    B3  11 lksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy.rkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                           +++  + +p+ +a+ h       e++tl+l +  g+sW+v++i  +++++r   l++GWk+F+++n+L++gD ++F+l ++++ +++v+
  Sobic.001G165100.5.p 226 GSQ-AMDIPRVYADVHlpF----ENQTLML-QCCGQSWDVRCIThKGRPNRgKSLSQGWKQFARDNKLQVGDLCLFELLENTKYTMNVH 308
                           444.499999999888432....3335665.569********7765555556789************************99******** PP

                           EE-S CS
                    B3  96 vfrk 99 
                           ++r+
  Sobic.001G165100.5.p 309 IIRA 312
                           *996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5086311.82924117IPR003340B3 DNA binding domain
SuperFamilySSF1019361.44E-2124124IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.104.7E-2225129IPR015300DNA-binding pseudobarrel domain
CDDcd100178.44E-2125115No hitNo description
SMARTSM010191.1E-527117IPR003340B3 DNA binding domain
PfamPF023627.2E-1528114IPR003340B3 DNA binding domain
SuperFamilySSF1019368.24E-20207312IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.102.3E-22207312IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086311.942215313IPR003340B3 DNA binding domain
CDDcd100173.25E-16217311No hitNo description
SMARTSM010194.9E-8218313IPR003340B3 DNA binding domain
PfamPF023622.3E-14227312IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 314 aa     Download sequence    Send to blast
MSKPGKRSKE SNAYFYPDDK DGKDKYFFKV LVGEFRERLA VPDKFEQHFR GLIGNRVKLE  60
SRCGHTFDAE VAKNLGKVVL QTGWKEFVTA HDLNMGDFLV FKCDGTSRLK VFIFDLSCCE  120
KVPPCRVKRN HICGRETREI NTETSSTCGD LPLNVTASSS TSPSDSSGDS ISPEDQKSHY  180
VPGYILPRRT YLTCVQMKKL KERVRASTST IPIYGCIVKK SNLRRGSQAM DIPRVYADVH  240
LPFENQTLML QCCGQSWDVR CITHKGRPNR GKSLSQGWKQ FARDNKLQVG DLCLFELLEN  300
TKYTMNVHII RAK*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.188420.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G165100.5.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021307296.10.0putative B3 domain-containing protein Os03g0621600 isoform X1
RefseqXP_021307298.10.0putative B3 domain-containing protein Os03g0621600 isoform X3
RefseqXP_021307299.10.0putative B3 domain-containing protein Os03g0621600 isoform X3
TrEMBLA0A1B6QJA60.0A0A1B6QJA6_SORBI; Uncharacterized protein
TrEMBLA0A1B6QJA90.0A0A1B6QJA9_SORBI; Uncharacterized protein
STRINGSb01g014400.11e-176(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.13e-19B3 family protein