PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G165000.1.p
Common NameSb01g014400, SORBIDRAFT_01g014400
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family B3
Protein Properties Length: 313aa    MW: 36113.9 Da    PI: 9.9053
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G165000.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.21.2e-17351141297
                           HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                            + rl +p kf  +h  g++   +  ++le++ g +++v++   k+ g++vl++GWkeFv a++L+ gDf+vFk d++s+f  +v +f
  Sobic.001G165000.1.p  35 FRERLAVPEKFE-QHfrGLI---GNRVKLESRCGHTFDVEV--AKNLGKVVLQTGWKEFVTAHDLNMGDFLVFKCDKTSRF--KVFIF 114
                           456799*****6.5656555...457***************..*******************************8887887..66555 PP
2B351.22.3e-162263111299
                           HTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE.EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS
                    B3  12 ksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr.yvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 
                           +s+ l +p+ +a+ +       e++tl+l+  +g+sWev++ ++k ++r   l kGWk+F+++n+L+ gD ++F+l ++++ +++v+v+
  Sobic.001G165000.1.p 226 RSQALNIPRVYADVYlpF----EDQTLMLRC-RGKSWEVRCVIKKDKKRvKRLMKGWKQFARDNKLRLGDLCLFELLENTKYTMNVHVI 309
                           566799999999888542....344677665.9********99777777688999**********************999999*****9 PP

                           -S CS
                    B3  98 rk 99 
                           r+
  Sobic.001G165000.1.p 310 RA 311
                           96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.2E-2321128IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.28E-2224124IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.26624117IPR003340B3 DNA binding domain
CDDcd100176.47E-2125115No hitNo description
SMARTSM010199.0E-627117IPR003340B3 DNA binding domain
PfamPF023621.5E-1527113IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.108.8E-23206311IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-20207311IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086312.802215312IPR003340B3 DNA binding domain
SMARTSM010191.0E-7216312IPR003340B3 DNA binding domain
CDDcd100171.68E-14225310No hitNo description
PfamPF023622.6E-14225311IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MRKPGKRSRE RDAYFYSDHN DEKDKYFFKV LVGDFRERLA VPEKFEQHFR GLIGNRVKLE  60
SRCGHTFDVE VAKNLGKVVL QTGWKEFVTA HDLNMGDFLV FKCDKTSRFK VFIFDLSCCE  120
KVPPCLVKRN HICGRETREM HIEISSSCGD LPMNVTTNSS TSLSDSSGDS VRPEDQKSHC  180
VPGYILPRGT CLTCVQMKKL KERVRASSSR IPIYGCIINN GNVHGRSQAL NIPRVYADVY  240
LPFEDQTLML RCRGKSWEVR CVIKKDKKRV KRLMKGWKQF ARDNKLRLGD LCLFELLENT  300
KYTMNVHVIR AK*
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1263271KKDKKRVKR
2265272DKKRVKRL
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.188420.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G165000.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021304713.10.0uncharacterized protein LOC8062495 isoform X1
SwissprotQ851V55e-87Y3216_ORYSJ; Putative B3 domain-containing protein Os03g0621600
TrEMBLC5WS840.0C5WS84_SORBI; Uncharacterized protein
STRINGSb01g014400.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP29012985
Representative plantOGRP5872421
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G33280.12e-17B3 family protein