PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G154500.2.p
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family NF-YA
Protein Properties Length: 322aa    MW: 33855.1 Da    PI: 10.219
Description NF-YA family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G154500.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1CBFB_NFYA99.63.1e-31149205158
             CBFB_NFYA   1 deplYVNaKQyqrIlkRRqkRakleeekkldeksrkpylheSRhkhAlrRpRgsgGrF 58 
                           d+p+YVN+KQy++Il+RR +Rak+e+e++l +k+rkpylheSRh hA+rR RgsgGrF
  Sobic.001G154500.2.p 149 DAPIYVNPKQYEGILRRRRARAKAESENRL-AKGRKPYLHESRHLHAMRRVRGSGGRF 205
                           68****************************.**************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM005212.2E-34147208IPR001289Nuclear transcription factor Y subunit A
PROSITE profilePS5115236.477148208IPR001289Nuclear transcription factor Y subunit A
PfamPF020459.1E-28151205IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-22151173IPR001289Nuclear transcription factor Y subunit A
PRINTSPR006162.2E-22182205IPR001289Nuclear transcription factor Y subunit A
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 322 aa     Download sequence    Send to blast
MMSFKGHEGF GGQVSAATGA GSQVAASHGA AAAGAGPLPW WAGPQLLFGE PAPLSPEETR  60
RDSQFQVVPG AQGTPPDPAP PKRGTPEVLK FSVFQGNLES GGKGEKNPKN STTIALQSPF  120
PEYNGRFEIG LGQSMSGGRM LLPLNAPADA PIYVNPKQYE GILRRRRARA KAESENRLAK  180
GRKPYLHESR HLHAMRRVRG SGGRFLNTKK EGGHGTDVDA NGGSKMAAAA PSRLTMPPSS  240
EPPRPPGLSN ISNPHFHSQS SVSSLSGSDV SNIYGGLEQP PRAPPFFTVL PPIMDGDHGG  300
VTHISSFKWA ASDSCCELLK A*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4awl_A3e-17149217271NUCLEAR TRANSCRIPTION FACTOR Y SUBUNIT ALPHA
4g91_A3e-17149207261HAPB protein
4g92_A3e-17149207261HAPB protein
Search in ModeBase
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.19870.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G154500.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0382990.0BT038299.1 Zea mays full-length cDNA clone ZM_BFb0224M21 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021306959.10.0nuclear transcription factor Y subunit A-2 isoform X2
TrEMBLA0A1Z5S5R30.0A0A1Z5S5R3_SORBI; Uncharacterized protein
STRINGSb01g013430.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G14020.16e-26nuclear factor Y, subunit A6