PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G143100.2.p | ||||||||
Common Name | Sb01g012460, SORBIDRAFT_01g012460 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | MYB_related | ||||||||
Protein Properties | Length: 190aa MW: 20462.4 Da PI: 10.7239 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 43.3 | 8.5e-14 | 26 | 70 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT++E++++++a ++G + Wk++ + + ++t+ q++s+ qk+ Sobic.001G143100.2.p 26 RERWTADEHDRFLHALLLFGRD-WKRVQAFVA-TKTGTQIRSHAQKH 70 78******************77.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51294 | 15.287 | 21 | 75 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.36E-15 | 21 | 76 | IPR009057 | Homeodomain-like |
TIGRFAMs | TIGR01557 | 4.3E-15 | 25 | 73 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 2.8E-9 | 25 | 73 | IPR001005 | SANT/Myb domain |
Pfam | PF00249 | 2.7E-11 | 26 | 70 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.4E-7 | 26 | 70 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 8.19E-8 | 28 | 71 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 190 aa Download sequence Send to blast |
MAAAAKSSAG TAVKKCRKPY VMTRPRERWT ADEHDRFLHA LLLFGRDWKR VQAFVATKTG 60 TQIRSHAQKH FLRAEKKLGL AAAAAAAAPH PRTSAGAGAG PGHRQQRPLS TGWCADDDGA 120 SAPDVETVRL PLSPDDLRFA QVYRFVGDVF GSGAPRPVEA QLHRLLGADP VIVDTILRVL 180 ANLQDNLSL* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G143100.2.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU976186 | 3e-91 | EU976186.1 Zea mays clone 679787 hypothetical protein mRNA, complete cds. | |||
GenBank | KJ728264 | 3e-91 | KJ728264.1 Zea mays clone pUT6541 MYB-related transcription factor (MYBR45) gene, partial cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466695.1 | 1e-135 | protein REVEILLE 8 | ||||
TrEMBL | A0A1Z5S5N0 | 1e-134 | A0A1Z5S5N0_SORBI; Uncharacterized protein | ||||
STRING | Sb01g012460.1 | 1e-135 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP3642 | 31 | 70 | Representative plant | OGRP1255 | 15 | 49 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G01520.1 | 2e-27 | MYB_related family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G143100.2.p |
Entrez Gene | 8056747 |