PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G127200.1.p
Common NameSb01g011150, SORBIDRAFT_01g011150
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family C3H
Protein Properties Length: 746aa    MW: 79472.4 Da    PI: 6.9665
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G127200.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH21.73.7e-07308328526
                           --SGGGGTS--TTTTT-SS-SS CS
               zf-CCCH   5 lCrffartGtCkyGdrCkFaHg 26 
                           +C++f++ G C++Gd C +aHg
  Sobic.001G127200.1.p 308 PCPDFRK-GVCRRGDMCEYAHG 328
                           8******.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd002048.97E-1252168No hitNo description
SuperFamilySSF484034.54E-1490168IPR020683Ankyrin repeat-containing domain
SMARTSM002480.2490120IPR002110Ankyrin repeat
PROSITE profilePS5029716.12290165IPR020683Ankyrin repeat-containing domain
PfamPF127961.1E-990158IPR020683Ankyrin repeat-containing domain
Gene3DG3DSA:1.25.40.204.1E-1691169IPR020683Ankyrin repeat-containing domain
PROSITE profilePS5008812.663125160IPR002110Ankyrin repeat
SMARTSM002480.14125157IPR002110Ankyrin repeat
SMARTSM003561.1E-5303329IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.4E-4307330IPR000571Zinc finger, CCCH-type
PfamPF006421.1E-4308328IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.375308330IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.8E-4336366IPR000571Zinc finger, CCCH-type
SMARTSM0035637338361IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0005737Cellular Componentcytoplasm
GO:0005515Molecular Functionprotein binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 746 aa     Download sequence    Send to blast
MNGMPISASS AAGVDGGAVA AGTPMKNATA AAAVAEMARH LTVDTEDAFA GLLEFAADDN  60
AEGLRRALER APPAAADEAG LWYGRRKVLE HRTPLMVAAT YGSLAALRLL VSLPSVDVNR  120
RSGTDGTTAL HCAASGGSRT AVEAVKLLLG AGADADTMDD AGRRPADVIS VPPKMFDAKF  180
ALQDLLGFPK SEHGMLRVVT RSTNSISSPV SSPTAEDARS PSASVMMISK FGDLPRVATS  240
EKKEYPVDPS LPDIKNSIYA SDEFRMYSFK IRPCSRAYSH DWTECPFVHP GENARRRDPR  300
KYHYSCVPCP DFRKGVCRRG DMCEYAHGVF ECWLHPAQYR TRLCKDGTSC NRRVCFFAHT  360
TDELRPLYVS TGSAVPSPRA SATAAMEMAA AMGLMPGSPS SVSAVMSPFT PPMSPSGNGM  420
PPSLGWQQPN VPTLHLPGSS LQSSRLRTSL SARDMPADDY SMMPDLDSQL MNDLCYSRLS  480
SSTGNHSART KSLNPSNLDD LFSAEMVSSP RYSNADQGAM FSPSHKAAIL NQFQQQQQAL  540
LSPINTGVYS PKADNQQLPS HSSLLQASLG MSSPGRMSPR CVESGSPMNS HLAAALVQRE  600
KQQQTMRSLS SRDLGPSAAR ASALGSPLSS SWSKWGSPSG TPDWGVNGEE LGKLRRSSSF  660
ELRSGGDDPD LSWVHTLVKE SPPEKQVTTA ESINSVGPSP LMPPGMNSGE GSGLNTQLDA  720
HDQAAVIGAL LEQMQLDQQI GSLAT*
Expression -- UniGene ? help Back to Top
UniGene ID E-value Expressed in
Sbi.70810.0panicle
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G127200.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0619330.0BT061933.1 Zea mays full-length cDNA clone ZM_BFb0199C03 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466619.10.0zinc finger CCCH domain-containing protein 24
RefseqXP_021306380.10.0zinc finger CCCH domain-containing protein 24
SwissprotQ10EL10.0C3H24_ORYSJ; Zinc finger CCCH domain-containing protein 24
TrEMBLC5WNW00.0C5WNW0_SORBI; Uncharacterized protein
STRINGSb01g011150.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP82337126
Representative plantOGRP7091569
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G41900.10.0CCCH-type zinc finger protein with ARM repeat domain
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]