PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G121600.1.p
Common NameSb01g010690, SORBIDRAFT_01g010690
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family TCP
Protein Properties Length: 381aa    MW: 40859.7 Da    PI: 8.3239
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G121600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP164.84.3e-511182761136
                   TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssasec.eaesssssasnsssg 88 
                           aa++kdrhski+T++g+RdRR+Rls+++a++fF+Lqd+LGfdk+skt++WLl+ +k+ai+e++ ++ +++sec e++sss s++ ++++
  Sobic.001G121600.1.p 118 AAARKDRHSKICTAGGMRDRRMRLSLDVARKFFALQDMLGFDKASKTVQWLLNTSKAAIQEIMADDVDASSECvEDGSSSLSVDGKHNP 206
                           589***********************************************************************999999999977777 PP

                   TCP  89 .....................kaaksaakskksqksaasalnlak.esrakarararertrekmriknkl 136
                                                k++k+a+++k+++ks ++a+ + + e+rakar+rarert+ek+r+++++
  Sobic.001G121600.1.p 207 aeqlgdqkpkgngrsegkkpaKSRKAATTPKPPRKSGNNAHPVPDkETRAKARERARERTKEKHRMRWVK 276
                           788999999999999*****75555555777776666666655555*********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036343.5E-45120272IPR005333Transcription factor, TCP
PROSITE profilePS5136935.255121179IPR017887Transcription factor TCP subgroup
PROSITE profilePS5137011.593252269IPR017888CYC/TB1, R domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0048831Biological Processregulation of shoot system development
Sequence ? help Back to Top
Protein Sequence    Length: 381 aa     Download sequence    Send to blast
MFPFCDSSSP MDLPLYQQLQ LSPPSPKPDQ SSSFYCCYPC SPPFAAAAAD ASFHLSYQIG  60
SAAAAIPPQA VINSPEDLPV QPLMEQAPAP PTELVACASG GAQGAGVSVS LDRAAAAAAA  120
RKDRHSKICT AGGMRDRRMR LSLDVARKFF ALQDMLGFDK ASKTVQWLLN TSKAAIQEIM  180
ADDVDASSEC VEDGSSSLSV DGKHNPAEQL GDQKPKGNGR SEGKKPAKSR KAATTPKPPR  240
KSGNNAHPVP DKETRAKARE RARERTKEKH RMRWVKLASA IDVEAAAASV ASDRPSSNHL  300
NHHHHSSSSM NMPRAAEAEL EERERCSSTL NNRGRMQEIT GASEVVLGFG NGGGYGGGNY  360
YCQEQWELGG VVFQQNSRFY *
Expression -- Description ? help Back to Top
Source Description
UniprotTISSUE SPECIFICITY: Expressed in axillary inflorescence primordia, immature internodes below these primordia, and immature husk surrounding these primordia. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:9087405}.
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Involved in apical dominance. Represses the growth of axillary organs (e.g. lateral branches), but enables the formation of female inflorescences. Regulates the number and length of axillary branches. {ECO:0000269|PubMed:12524360, ECO:0000269|PubMed:16642024, ECO:0000269|PubMed:17947410, ECO:0000269|PubMed:8536981, ECO:0000269|PubMed:9087405}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G121600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAF4662040.0AF466204.1 Sorghum bicolor clone SBTXS_0045I19, partial sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466597.10.0transcription factor TEOSINTE BRANCHED 1
SwissprotQ93WI20.0TB1_MAIZE; Transcription factor TEOSINTE BRANCHED 1
TrEMBLC5WNR60.0C5WNR6_SORBI; Uncharacterized protein
STRINGSb01g010690.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP72533651
Representative plantOGRP1265045
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68800.18e-24TCP domain protein 12
Publications ? help Back to Top
  1. Tenaillon MI, et al.
    Patterns of DNA sequence polymorphism along chromosome 1 of maize (Zea mays ssp. mays L.).
    Proc. Natl. Acad. Sci. U.S.A., 2001. 98(16): p. 9161-6
    [PMID:11470895]
  2. Clark RM,Tavaré S,Doebley J
    Estimating a nucleotide substitution rate for maize from polymorphism at a major domestication locus.
    Mol. Biol. Evol., 2005. 22(11): p. 2304-12
    [PMID:16079248]