PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G105000.2.p
Common NameSb01g009380, SORBIDRAFT_01g009380
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 316aa    MW: 34953.1 Da    PI: 6.3161
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G105000.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH32.91.2e-10147195355
                           HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
                   HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                            +h+ +Er RR++i +++  L++l+P +    +k   Ka +L + ++Y++sLq
  Sobic.001G105000.2.p 147 NSHSLAERLRRKKISERMKLLQDLVPGC----NKITGKAVMLDEIINYVQSLQ 195
                           58**************************....999*****************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000834.07E-11142199No hitNo description
SuperFamilySSF474596.02E-17142211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088815.44144194IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.1E-16144211IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000105.5E-8147195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003533.5E-10150200IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009637Biological Processresponse to blue light
GO:0005634Cellular Componentnucleus
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 316 aa     Download sequence    Send to blast
MYSGQQSDQG PSANSGREFP KANWNSFTMH QKMAYSGQYG FGSYGIGLED RPGLYQSSSG  60
TLSQDIQMSD EHSGGVKKRK GMEDRVTLLH NAGDQQTEGS SQPERNSMEE GNRKISPKMQ  120
SKEDSSDGDG TKEDYVHVRA KRGQATNSHS LAERLRRKKI SERMKLLQDL VPGCNKITGK  180
AVMLDEIINY VQSLQRQVEF LSMKLATVNP ELGFDIEQII SKQMMLSQDR HLAFYGVDPG  240
SSSLTAPFNQ GIMQPEMMCN ISNPVDVLHG TIHDLSTMNQ IPSMWEGVQN MPQMNFNPVA  300
ADSGTNNSGS MKIEQ*
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00135DAPTransfer from AT1G10120Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G105000.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0353480.0BT035348.1 Zea mays full-length cDNA clone ZM_BFb0057A01 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002463945.10.0transcription factor bHLH49 isoform X2
TrEMBLC5WM060.0C5WM06_SORBI; Uncharacterized protein
STRINGSb01g009380.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68920.35e-56bHLH family protein