PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G082600.2.p
Common NameSb01g007440, SORBIDRAFT_01g007440
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family bHLH
Protein Properties Length: 325aa    MW: 33074.1 Da    PI: 8.1397
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G082600.2.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH17.19.7e-06174219454
                           HHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
                   HLH   4 ahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                           a n+r r RR+r+ +++  L++l+ +      +K + a++L +A  YI+ L
  Sobic.001G082600.2.p 174 ATNKRPRVRRERLGERIIALQQLVSPF-----GKSDTASVLHEALGYIRFL 219
                           569***********************8.....8****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088812.455170219IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.31E-12175235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.109.5E-8176230IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.88E-5176224No hitNo description
SMARTSM003531.3E-5176225IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045944Biological Processpositive regulation of transcription from RNA polymerase II promoter
GO:0005634Cellular Componentnucleus
GO:0001046Molecular Functioncore promoter sequence-specific DNA binding
GO:0001228Molecular Functiontranscriptional activator activity, RNA polymerase II transcription regulatory region sequence-specific binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 325 aa     Download sequence    Send to blast
MVKEEEIMAE AGGGRGGYMD LLGLGEDDYL LCLSPSSYFA SSVVSATTTS ATTTAAASSP  60
TCASYLDMAP AYHHMLSFAG QDQQYHGDGV LGFQYYGAGD HAIPAAVPQK SSPTTECSSI  120
SSMSSSPPAT AISAVSCSKP QAFKKKGSRS SEQRKAASAA AAAPAAPAAA GGGATNKRPR  180
VRRERLGERI IALQQLVSPF GKSDTASVLH EALGYIRFLH DQVQVLSSPY MQRQPASAAH  240
VPESAAGTVV EPPRPKDLRS RGLCLVPVSC TEHLAGNSHG GNGADLWSVA AGMAKAAADK  300
GPAGGMLLPG GGGGGGYPRQ GHLA*
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G082600.2.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankBT0364110.0BT036411.1 Zea mays full-length cDNA clone ZM_BFb0112J09 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466417.10.0transcription factor bHLH123 isoform X1
TrEMBLC5X0620.0C5X062_SORBI; Uncharacterized protein
STRINGSb01g007440.10.0(Sorghum bicolor)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19500.15e-30bHLH family protein