PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Sobic.001G035000.1.p | ||||||||
Common Name | Sb01g003270, SORBIDRAFT_01g003270 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
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Family | C2H2 | ||||||||
Protein Properties | Length: 150aa MW: 15137.2 Da PI: 10.4827 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.2 | 0.00054 | 108 | 128 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23 C+ Cg sF L H+r+H Sobic.001G035000.1.p 108 CHVCGLSFEMGQALGGHMRRH 128 ********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 1.5 | 50 | 72 | IPR015880 | Zinc finger, C2H2-like |
Pfam | PF13912 | 4.8E-10 | 50 | 74 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.702 | 50 | 77 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.24E-6 | 50 | 72 | No hit | No description |
PROSITE pattern | PS00028 | 0 | 52 | 72 | IPR007087 | Zinc finger, C2H2 |
SuperFamily | SSF57667 | 2.24E-6 | 101 | 128 | No hit | No description |
SMART | SM00355 | 1.4 | 106 | 128 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.702 | 106 | 133 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 8.2E-11 | 106 | 131 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 108 | 128 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 150 aa Download sequence Send to blast |
MAKHPRDSGA GAVPLSLALS LGGGGVAAEH GSNKRHRRAA AGGGDGGGEF VCKTCSRAFG 60 SFQALGGHRT SHLRGRHGLA LGMPAPAKDD AKETTTKQPA AASASHLCHV CGLSFEMGQA 120 LGGHMRRHRE EAAAATTAQA PPVLLQLFV* |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Sobic.001G035000.1.p |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | BT086979 | 4e-59 | BT086979.2 Zea mays full-length cDNA clone ZM_BFb0223D14 mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002466195.1 | 1e-101 | zinc finger protein ZAT12 | ||||
TrEMBL | C5WV17 | 1e-100 | C5WV17_SORBI; Uncharacterized protein | ||||
STRING | Sb01g003270.1 | 1e-101 | (Sorghum bicolor) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Monocots | OGMP1305 | 30 | 117 | Representative plant | OGRP11904 | 3 | 4 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G59820.1 | 9e-19 | C2H2 family protein |
Link Out ? help Back to Top | |
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Phytozome | Sobic.001G035000.1.p |
Entrez Gene | 8057368 |