PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Sobic.001G006600.1.p
Common NameSb01g000696, SORBIDRAFT_01g000696
Organism
Sorghum bicolor
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; Liliopsida; Petrosaviidae; commelinids; Poales; Poaceae; PACMAD clade; Panicoideae; Andropogonodae; Andropogoneae; Sorghinae; Sorghum
Family WRKY
Protein Properties Length: 393aa    MW: 42501.7 Da    PI: 6.5582
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Sobic.001G006600.1.pgenomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY986.1e-31197255259
                           --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
                  WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                           +D ++WrKYGqK++kgs++pr+YYrC+s+ gC+++k+vers++dp++++itY+ eHnh+
  Sobic.001G006600.1.p 197 SDLWAWRKYGQKPIKGSPYPRGYYRCSSSkGCMARKQVERSRSDPNMLVITYTAEHNHP 255
                           699************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5081133.247191257IPR003657WRKY domain
Gene3DG3DSA:2.20.25.801.1E-30194257IPR003657WRKY domain
SuperFamilySSF1182901.83E-26195257IPR003657WRKY domain
SMARTSM007744.3E-38196256IPR003657WRKY domain
PfamPF031068.8E-26198255IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 393 aa     Download sequence    Send to blast
MDIAEEAVAG TAAQGDLAEV VARAGAMAMA AAPSHHRRPP SPSPAAADHS HVMSRAAGQI  60
MAIPPACYDE EQELRPAAAC GDAVMFDVPS SMVVDPYHQL SSSAATAPPH GHGGYWLPPQ  120
QISQQACYGL DVAMGGAAAA DADGDEPMMM RISPVTPPPP SHHQIMKSRK NEVKKVVCIP  180
ALPPASSRPG GGEVIPSDLW AWRKYGQKPI KGSPYPRGYY RCSSSKGCMA RKQVERSRSD  240
PNMLVITYTA EHNHPWPMQR NVLAGYSRPH THMSNCKKKN SCRVEPTSSW PTSSSSSSSS  300
KNANYFEHNV VPSSNIECQQ MTNMMEDNAA GYVAYAIDTL DEEGVAMHQP INRNSIQPSD  360
EVFAELEELE PSNNPVNANI YSRGVSYEWQ KF*
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B2e-23170257279Disease resistance protein RRS1
5w3x_D2e-23170257279Disease resistance protein RRS1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Cis-element ? help Back to Top
SourceLink
PlantRegMapSobic.001G006600.1.p
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankEU9648151e-152EU964815.1 Zea mays clone 281745 WRKY transcription factor 14 mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002466074.20.0probable WRKY transcription factor 35 isoform X1
SwissprotQ9SA802e-53WRK14_ARATH; Probable WRKY transcription factor 14
TrEMBLA0A1B6QGP20.0A0A1B6QGP2_SORBI; Uncharacterized protein
STRINGSb01g000696.10.0(Sorghum bicolor)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MonocotsOGMP134662832
Representative plantOGRP1417875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G30650.11e-53WRKY DNA-binding protein 14
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]