PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | Rsa1.0_76544.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
|
||||||||
Family | C3H | ||||||||
Protein Properties | Length: 71aa MW: 7893.95 Da PI: 8.1184 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 41.5 | 2.2e-13 | 7 | 30 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26 +++Crff+ tGtCkyGd Ck++H+ Rsa1.0_76544.1_g00001.1 7 RAECRFFMSTGTCKYGDDCKYSHP 30 899********************8 PP | |||||||
2 | zf-CCCH | 36.1 | 1.1e-11 | 43 | 69 | 1 | 27 |
--S---SGGGGTS--TTTTT-SS-SSS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHgp 27 ++++ C +f ++G+CkyG++Ck+ H++ Rsa1.0_76544.1_g00001.1 43 PGQPACGNFKAYGFCKYGSNCKYDHPM 69 5789*********************95 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50103 | 15.929 | 4 | 32 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.2E-8 | 5 | 31 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.14E-7 | 7 | 30 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 1.5E-11 | 7 | 30 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 3.7E-7 | 10 | 29 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 6.15E-7 | 41 | 68 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 8.0E-6 | 42 | 69 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.511 | 42 | 70 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 4.7E-9 | 44 | 69 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.7E-4 | 48 | 67 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 71 aa Download sequence Send to blast |
PDSSSERAEC RFFMSTGTCK YGDDCKYSHP NLTHPIVVLP ARPGQPACGN FKAYGFCKYG 60 SNCKYDHPMP L |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | Rsa1.0_76544.1_g00001.1 |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_018472932.1 | 2e-45 | PREDICTED: zinc finger CCCH domain-containing protein 26-like | ||||
Swissprot | O48772 | 3e-31 | C3H26_ARATH; Zinc finger CCCH domain-containing protein 26 | ||||
TrEMBL | A0A397ZWR3 | 3e-35 | A0A397ZWR3_BRACM; Uncharacterized protein | ||||
TrEMBL | M4E2B9 | 3e-35 | M4E2B9_BRARP; Uncharacterized protein | ||||
STRING | Bra022919.1-P | 6e-36 | (Brassica rapa) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT2G32930.1 | 1e-33 | zinc finger nuclease 2 |