PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_57434.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | C3H | ||||||||
Protein Properties | Length: 107aa MW: 11845.3 Da PI: 8.838 | ||||||||
Description | C3H family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-CCCH | 25.8 | 1.8e-08 | 23 | 48 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 yk +lC+ f + C+yG++C+F H+ Rsa1.0_57434.1_g00001.1 23 YKGRLCNKFNSGEGCPYGESCTFLHD 48 899********66************7 PP | |||||||
2 | zf-CCCH | 41.3 | 2.6e-13 | 78 | 103 | 1 | 26 |
--S---SGGGGTS--TTTTT-SS-SS CS zf-CCCH 1 yktelCrffartGtCkyGdrCkFaHg 26 +kt++C+ + +G+C++G +C+FaHg Rsa1.0_57434.1_g00001.1 78 WKTRICNKWEISGFCPFGTNCNFAHG 103 8************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00356 | 4.5E-4 | 22 | 49 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 1.83E-7 | 22 | 49 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.615 | 22 | 50 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 7.0E-11 | 23 | 49 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.6E-6 | 23 | 48 | IPR000571 | Zinc finger, CCCH-type |
SuperFamily | SSF90229 | 2.2E-9 | 74 | 104 | IPR000571 | Zinc finger, CCCH-type |
Gene3D | G3DSA:4.10.1000.10 | 1.3E-13 | 76 | 104 | IPR000571 | Zinc finger, CCCH-type |
PROSITE profile | PS50103 | 14.812 | 77 | 105 | IPR000571 | Zinc finger, CCCH-type |
SMART | SM00356 | 5.8E-6 | 77 | 104 | IPR000571 | Zinc finger, CCCH-type |
Pfam | PF00642 | 2.7E-10 | 78 | 103 | IPR000571 | Zinc finger, CCCH-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 107 aa Download sequence Send to blast |
TVEDLRRPPP IRQETRGESG RPYKGRLCNK FNSGEGCPYG ESCTFLHDEV PRNRESFAIS 60 LGTRGGYGGN VVVVAPYWKT RICNKWEISG FCPFGTNCNF AHGASGK |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_57434.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | EU953556 | 8e-66 | EU953556.1 Zea mays clone 1434304 mRNA sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018434379.1 | 7e-64 | PREDICTED: zinc finger CCCH domain-containing protein 12 | ||||
Refseq | XP_018434380.1 | 7e-64 | PREDICTED: zinc finger CCCH domain-containing protein 12 | ||||
Swissprot | Q9LQM3 | 3e-28 | C3H12_ARATH; Zinc finger CCCH domain-containing protein 12 | ||||
TrEMBL | A0A078H4E6 | 5e-45 | A0A078H4E6_BRANA; BnaA05g08590D protein | ||||
STRING | Bo4g038870.1 | 2e-45 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM4003 | 27 | 58 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G32360.1 | 1e-30 | C3H family protein |