PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | Rsa1.0_48400.1_g00001.1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Brassiceae; Raphanus
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Family | B3 | ||||||||
Protein Properties | Length: 85aa MW: 9766.08 Da PI: 6.2294 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 43 | 8e-14 | 2 | 67 | 23 | 95 |
.HTT.---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 23 aeeh.ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +++h +gk+ ++ t tl++ + ++W+v + ++ lt+GWkeF++a++L+ gD+v+Fkl+g++ f +v+ Rsa1.0_48400.1_g00001.1 2 FSKHiQGKT-NGNTWTLTSdATDQTWQVIQ--EERR----LTRGWKEFAEAHDLRIGDIVIFKLEGSMVF--HVT 67 556645554.55577777658889999999..7777....************************998888..666 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM01019 | 2.3E-5 | 1 | 72 | IPR003340 | B3 DNA binding domain |
PROSITE profile | PS50863 | 12.872 | 1 | 72 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 6.82E-12 | 2 | 69 | No hit | No description |
Pfam | PF02362 | 5.8E-9 | 7 | 64 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 1.57E-15 | 8 | 79 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.5E-18 | 11 | 81 | IPR015300 | DNA-binding pseudobarrel domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 85 aa Download sequence Send to blast |
FFSKHIQGKT NGNTWTLTSD ATDQTWQVIQ EERRLTRGWK EFAEAHDLRI GDIVIFKLEG 60 SMVFHVTPFG PSCCDIQYTS MLVVT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | Rsa1.0_48400.1_g00001.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC189599 | 1e-125 | AC189599.2 Brassica rapa subsp. pekinensis cultivar Inbred line 'Chiifu' clone KBrH014H10, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_018438527.1 | 9e-59 | PREDICTED: B3 domain-containing protein REM7-like | ||||
Refseq | XP_018461325.1 | 9e-59 | PREDICTED: B3 domain-containing protein REM7-like | ||||
Refseq | XP_018483785.1 | 9e-59 | PREDICTED: B3 domain-containing protein REM7-like | ||||
Swissprot | O81778 | 5e-32 | REM9_ARATH; B3 domain-containing protein REM9 | ||||
Swissprot | Q8H2D0 | 1e-32 | REM7_ARATH; B3 domain-containing protein REM7 | ||||
TrEMBL | A0A3P5YBE8 | 2e-51 | A0A3P5YBE8_BRACM; Uncharacterized protein | ||||
TrEMBL | A0A3P5YP81 | 5e-51 | A0A3P5YP81_BRACM; Uncharacterized protein | ||||
TrEMBL | M4F5X8 | 2e-50 | M4F5X8_BRARP; Uncharacterized protein | ||||
STRING | Bra016772.1-P | 5e-51 | (Brassica rapa) | ||||
STRING | Bra036483.1-P | 8e-51 | (Brassica rapa) | ||||
STRING | Bra036486.1-P | 4e-51 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G31660.1 | 4e-35 | B3 family protein |
Publications ? help Back to Top | |||
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