PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | AT4G31660.1 | ||||||||
Common Name | ARF25, F28M20.150, REM7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Camelineae; Arabidopsis
|
||||||||
Family | B3 | ||||||||
Protein Properties | Length: 251aa MW: 28757.9 Da PI: 10.1266 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 48.1 | 2.1e-15 | 25 | 97 | 15 | 94 |
-EE--HHH.HTT..---..--SEEEEEE.TTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 15 rlvlpkkfaeeh..ggkkeesktltled.esgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 l +p kf+++ g + e++t+ l++ s ++W+vk+ ++++ lt GWkeF++a++ ++gD++vF+++g+ f +v AT4G31660.1 25 YLNIPVKFFSKRiqGRN--EGRTVELRTdASEKTWQVKI--QGRR----LTVGWKEFASAHDFRVGDIIVFRHEGSLVF--HV 97 589*****998875555..5557777765999*******..8887....***********************7764333..54 PP | |||||||
2 | B3 | 44.2 | 3.5e-14 | 173 | 242 | 4 | 74 |
E-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT- CS B3 4 vltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangL 74 + ++ ++l+++ l lp+kf ++ g++k +s +++l++e+ r+W++ l++r++s+++++++GW +F + gL AT4G31660.1 173 AHVTDSNLREDTLFLPRKFDRSDGLIK-GSNKIVLMNEEARTWTLILKFRNSSRTFYMRGGWTSFSMSMGL 242 56789999***************9997.567**********************************999988 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101936 | 9.81E-20 | 8 | 109 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 4.9E-22 | 8 | 105 | IPR015300 | DNA-binding pseudobarrel domain |
PROSITE profile | PS50863 | 12.633 | 11 | 103 | IPR003340 | B3 DNA binding domain |
CDD | cd10017 | 3.46E-16 | 13 | 98 | No hit | No description |
SMART | SM01019 | 2.6E-21 | 14 | 103 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 4.1E-10 | 26 | 95 | IPR003340 | B3 DNA binding domain |
Gene3D | G3DSA:2.40.330.10 | 5.2E-12 | 162 | 242 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 1.67E-13 | 166 | 243 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.19E-12 | 170 | 242 | No hit | No description |
PROSITE profile | PS50863 | 10.969 | 170 | 251 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 1.7E-6 | 170 | 251 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 5.4E-11 | 172 | 242 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 251 aa Download sequence Send to blast |
MADPVLQSPK NSHFFQPLLP GFDSYLNIPV KFFSKRIQGR NEGRTVELRT DASEKTWQVK 60 IQGRRLTVGW KEFASAHDFR VGDIIVFRHE GSLVFHVTAL GPSCCEIQYV PSCNNQENIS 120 NLSMKQSIKT ELESSLDEDK VNMGKFPRKK HVKKRIPEAE AKSFSSDKSC FVAHVTDSNL 180 REDTLFLPRK FDRSDGLIKG SNKIVLMNEE ARTWTLILKF RNSSRTFYMR GGWTSFSMSM 240 GLNLEIPSRL N |
Expression -- Microarray ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | E-value | ||||
GEO | 240256113 | 0.0 | ||||
Expression Atlas | AT4G31660 | - | ||||
AtGenExpress | AT4G31660 | - |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | AT4G31660.1 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Phenotype -- Mutation ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | ID | |||||
T-DNA Express | AT4G31660 |
Annotation -- Nucleotide ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | |||
GenBank | AJ515263 | 0.0 | AJ515263.1 Arabidopsis thaliana mRNA for putative auxin response factor 25 (arf25 gene). |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | NP_194894.2 | 0.0 | AP2/B3-like transcriptional factor family protein | ||||
Swissprot | Q8H2D0 | 0.0 | REM7_ARATH; B3 domain-containing protein REM7 | ||||
TrEMBL | A0A178UT08 | 0.0 | A0A178UT08_ARATH; Uncharacterized protein | ||||
STRING | AT4G31660.1 | 0.0 | (Arabidopsis thaliana) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM204 | 22 | 261 | Representative plant | OGRP2682 | 2 | 31 |
Link Out ? help Back to Top | |
---|---|
Phytozome | AT4G31660.1 |
Entrez Gene | 829294 |
iHOP | AT4G31660 |
wikigenes | AT4G31660 |
Publications ? help Back to Top | |||
---|---|---|---|
|